BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3534.p
         (874 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093868|ref|YP_001098943.1| alanyl-tRNA synthetase [Hermini...  1284   0.0  

>gi|134093868|ref|YP_001098943.1| alanyl-tRNA synthetase
           [Herminiimonas arsenicoxydans]
          Length = 869

 Score = 1284 bits (3322), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 636/873 (72%), Positives = 711/873 (81%), Gaps = 5/873 (0%)

Query: 1   MNSAEIRDKFLKFFESKEHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGTDKRNYVRA 60
           M S+EIR+KFLKFFESK HTIV SS LVPGNDPTL+FTNSGMVQFKDVFLG DKR YVRA
Sbjct: 1   MKSSEIREKFLKFFESKGHTIVASSPLVPGNDPTLMFTNSGMVQFKDVFLGEDKRPYVRA 60

Query: 61  ASVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTQVYGLP 120
            SVQ CLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKR++L W+WELLT+VYGLP
Sbjct: 61  TSVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALMWSWELLTKVYGLP 120

Query: 121 ADKLWATVYQTDDEAYDIWTKEIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSE 180
            DKL ATVY  D EAYDIWTKEIGLPPERV+RIGDNKG  Y SDNFW MA+TGPCGPCSE
Sbjct: 121 GDKLLATVYIEDQEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSE 180

Query: 181 IFYDHGPDIWGGPPGSPDADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGM 240
           IFYDHGP I GGPPGSPD DGDRYIEIWNNVFMQFD   D      T+ PLPAPCVDTGM
Sbjct: 181 IFYDHGPHIAGGPPGSPDEDGDRYIEIWNNVFMQFDMAEDG-----TVKPLPAPCVDTGM 235

Query: 241 GLERLAAILQHVHSNYEIDLFQALIKAAARETGETDLSNASLRVIADHIRATSFLIVDGV 300
           GLERLAAILQ VHSNYEID F ALIKAA RET   DL+N SL+VIADHIRAT+FL+ DGV
Sbjct: 236 GLERLAAILQGVHSNYEIDTFAALIKAAGRETNTKDLTNNSLKVIADHIRATAFLVADGV 295

Query: 301 IPGNEGRGYVLRRIIRRALRHGHKLGQTKPFFYKLVKDLVVQMGAAYPELPEAAERVEMV 360
           IP NEGRGYV RRIIRRA+RHG+KLGQ KPFF+KLVKDLV QMG AYP+L   A+R+  V
Sbjct: 296 IPSNEGRGYVQRRIIRRAIRHGYKLGQKKPFFHKLVKDLVEQMGEAYPKLQADAQRITEV 355

Query: 361 LKQEEERFGETLEHGMKILEAALAAHTGKLDGETAFTLYDTYGFPLDLTADICRERKVEL 420
           LK EEERF ETL +GM+IL+AALA     L GE AF L+DT+GFPLDL+AD+CRE  V +
Sbjct: 356 LKAEEERFFETLANGMEILDAALAGGVKVLPGEVAFKLHDTFGFPLDLSADVCREAGVSV 415

Query: 421 DEAGFNAAMERQKTAARAAGKFKMAAAIEYTGDKTRFVGYESLAKSAKVVALYVAGSPVQ 480
           DEAGF AAME+QK A RAAGKFKM  A+EYTG    F GYE+L + A VV LY  G+ VQ
Sbjct: 416 DEAGFAAAMEKQKAAGRAAGKFKMERAVEYTGAGNVFTGYENLQEDATVVGLYFEGTAVQ 475

Query: 481 KIEAGQDAIVVLDTTPFYAESGGQAGDAGALEAANALFAVADTQKIQAEVFGHHGQLIKG 540
           +++ GQ  IVVLDTTPFYAESGGQ GD G + A    F V DTQKI+A+V+GHHG   +G
Sbjct: 476 QLKEGQAGIVVLDTTPFYAESGGQVGDQGFVSAEGVQFGVEDTQKIKADVYGHHGVQTQG 535

Query: 541 SLAIGDAVQAKVDADQRARTMRNHSATHLMHKALREVLGSHVSQKGSLVDADKTRFDFSH 600
           +L +GD VQA VD  +RA TMRNHS TH+MHKALREVLG HV QKGSLVDA+KTRFDF+H
Sbjct: 536 TLKVGDKVQAAVDGARRAATMRNHSVTHIMHKALREVLGEHVQQKGSLVDAEKTRFDFAH 595

Query: 601 NAPMTAEEIRRVEEIVNREVLANVATGAQLMGYDDAIAAGAMALFGEKYGDQVRVLSIGT 660
           NAP+T E+I  +E+ VN E+LAN  T A++M  + A   GAM LFGEKYG+ VRVL IG+
Sbjct: 596 NAPVTHEQILEIEKRVNAEILANSDTQARVMDIESAQKTGAMMLFGEKYGETVRVLDIGS 655

Query: 661 STELCGGTHVARTGDIGLFKIVSEGGVAAGIRRVEAVTGEGALALVQSLSTRVAEAAAAL 720
           S ELCGGTHV+RTGDIGLFK+V E GVAAG+RR+EA+TG  AL+  Q L   V  AAA L
Sbjct: 656 SRELCGGTHVSRTGDIGLFKVVGESGVAAGVRRIEAITGANALSYFQDLEATVHSAAATL 715

Query: 721 KTQPEELLPRIGQVQDQVKALEKELASLKSKLASSQGDELVNQAVDINGIKVLAATLEGA 780
           K+ P EL PR+ QV DQVK LE+E+ +LK KLASSQGDEL++QAV+I GIKVLAA LE A
Sbjct: 716 KSPPAELQPRLAQVLDQVKTLEREINALKGKLASSQGDELLSQAVEIKGIKVLAAKLENA 775

Query: 781 DVATLRETMDKLKDKLKTAAIVLGSVKDGKVSLIAGVTADATAKVKAGELVNFVAQQVGG 840
           D  TLR TMD LKDKLKTAAIVL +V DGKVSLIAGVTADAT KVKAGELVNFVAQQVGG
Sbjct: 776 DAGTLRTTMDTLKDKLKTAAIVLAAVNDGKVSLIAGVTADATGKVKAGELVNFVAQQVGG 835

Query: 841 KGGGRPDMAQAGGTEPAALPGALQGVAGWVQSK 873
           KGGGR DMAQAGGT+ + LP ALQGVA WV  +
Sbjct: 836 KGGGRADMAQAGGTDASGLPAALQGVAAWVAER 868


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,549,487
Number of extensions: 62204
Number of successful extensions: 212
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 1
Length of query: 874
Length of database: 1,000,347
Length adjustment: 90
Effective length of query: 784
Effective length of database: 703,797
Effective search space: 551776848
Effective search space used: 551776848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)