BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3532.p
         (78 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093869|ref|YP_001098944.1| hypothetical protein HEAR0618 [...   121   7e-30

>gi|134093869|ref|YP_001098944.1| hypothetical protein HEAR0618
          [Herminiimonas arsenicoxydans]
          Length = 75

 Score =  121 bits (304), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 59/76 (77%), Positives = 68/76 (89%), Gaps = 1/76 (1%)

Query: 3  IQFHRELDARGLNCPLPILKTKKALADMTSGQVLRVTATDTGSVRDFQAFAKQTGNDLLE 62
          ++F ++LDARGLNCPLPILKTKKALA+MT+GQVLRV ATD GSVRDFQAFAKQTGN LLE
Sbjct: 1  MEFTKDLDARGLNCPLPILKTKKALAEMTTGQVLRVQATDPGSVRDFQAFAKQTGNQLLE 60

Query: 63 QSQNDEHEFIFFMKRK 78
          QS+ +E  F FFM+RK
Sbjct: 61 QSEENEI-FTFFMRRK 75


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.134    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 130,000
Number of extensions: 3934
Number of successful extensions: 6
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 78
Length of database: 1,000,347
Length adjustment: 48
Effective length of query: 30
Effective length of database: 842,187
Effective search space: 25265610
Effective search space used: 25265610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 121 (51.2 bits)