BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3531.p
         (531 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093603|ref|YP_001098678.1| putative glutamate synthase (NA...   741   0.0  
gi|134096237|ref|YP_001101312.1| glutamate synthase, large subun...   127   2e-30

>gi|134093603|ref|YP_001098678.1| putative glutamate synthase
           (NADPH) [Herminiimonas arsenicoxydans]
          Length = 542

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/536 (65%), Positives = 425/536 (79%), Gaps = 13/536 (2%)

Query: 5   RYFVFWAVVALTLALLALSAAHLLDWGWVLIPL--ALTAIGIHDLVQQRHAVLRNYPLIG 62
           RY     ++A  +  ++L  A   D GW L+ L  ALT +GI DL Q + A+LRNYP++ 
Sbjct: 7   RYLAL--MIAGCVFAVSLIMALQFDRGWWLVILSGALTTVGIADLSQSKRALLRNYPILA 64

Query: 63  HFRFMFEAIRPELRQYFFEDEMDGRPFSRKKRSVVYQRAKAEVDSRPFGTEIDMQQAGHE 122
           HFR+MFE++RPE+RQYF ED+    PFSR +RS+VYQRAK  +D RPFGT++D+ Q  +E
Sbjct: 65  HFRYMFESVRPEIRQYFLEDDAAPNPFSRNQRSLVYQRAKQAIDKRPFGTQMDVYQDNYE 124

Query: 123 WIGHSLSPTKIASHDFRVTVGADRAQPYSMSVFNVSAMSFGALSANAIRALNQGAKKGNF 182
           WI HS+ P K+ASHDFR+T+GA+RAQPYS SVFN+SAMSFGALSANAIRALNQGA+KG F
Sbjct: 125 WINHSIMPAKLASHDFRITIGAERAQPYSASVFNISAMSFGALSANAIRALNQGAQKGGF 184

Query: 183 AHDTGEGSVSAYHR-----EFGGDLVWQIASGYFGCRNADGSFNEEKFTTQAQSPQIKMI 237
            HDTGEGS+S YH+     + GGDL+W+I SGYFGCR+ DGSF+ EKF   A  PQ+KMI
Sbjct: 185 MHDTGEGSISRYHQPENAVDTGGDLMWEIGSGYFGCRSEDGSFSAEKFAVNANLPQVKMI 244

Query: 238 EVKLSQGAKPGHGGVLPAAKITPEIAATRGIPMGVDCISPAVHSSFSTPIGLLEFIEKLR 297
           EVKLSQGAKPGHGG+LP AK++ EIA  R IP GVDCISP+ HS+F TP GLL+FIE+LR
Sbjct: 245 EVKLSQGAKPGHGGMLPGAKVSIEIATARDIPEGVDCISPSSHSAFDTPTGLLQFIEQLR 304

Query: 298 SLSAGKPVGIKLCVGHPWEFFSIAKAMLKTGIVPDFITVDGSEGGTGAAPLEFVDHVGMP 357
           +LS GKP G KL +GHPWEFF I KAML TGI PDFI +DG EGGTGAAP+EF DHVG+P
Sbjct: 305 NLSGGKPTGFKLAIGHPWEFFGIVKAMLHTGITPDFIVIDGGEGGTGAAPVEFTDHVGVP 364

Query: 358 LQEGLVMVHNTLVGIGLRDKVKIGASGKIVTAFDVARTLALGADWCNSARGFMFALGCIQ 417
           LQE L++ HNTLVG  LRDKVKIGASGKI+TAFD+ RT+ALGADWCNSARGFMFALGCIQ
Sbjct: 365 LQEALLLAHNTLVGTKLRDKVKIGASGKIITAFDIVRTIALGADWCNSARGFMFALGCIQ 424

Query: 418 SQSCHTDRCPTGVATQNANRARALVVPDKAERVYRFHQSTLHALQELVQAAGLPHTSALR 477
           SQSCHTDRCPTG+ATQ+A R RALVVPDKAERV  FH++TL AL EL+ AAGL H S L+
Sbjct: 425 SQSCHTDRCPTGIATQDALRQRALVVPDKAERVANFHKNTLKALAELIAAAGLHHPSELK 484

Query: 478 PHHIVRRITDHEIQLMSNVLKYLQPNDLID----GNYRYRVYEKFWPIARAESFHP 529
           PHH+VRR++ ++++L S +L YL+   L+      +    V+ K+WPIA+AESFHP
Sbjct: 485 PHHLVRRVSANQVKLASALLPYLESGQLLSEAQATSELPEVFAKYWPIAQAESFHP 540


>gi|134096237|ref|YP_001101312.1| glutamate synthase, large subunit
            [Herminiimonas arsenicoxydans]
          Length = 1562

 Score =  127 bits (318), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 141/328 (42%), Gaps = 58/328 (17%)

Query: 145  DRAQPYSMSV--FNVSAMSFGALSANAIRALNQGAKKGNFAHDTGEG--SVSAYHREFGG 200
            D  +P    V  F   AMS G++S  A   L     +     +TGEG      Y  E  G
Sbjct: 868  DEVEPAKEIVKRFATGAMSLGSISTEAHATLAIAMNRIGGKSNTGEGGEDTKRYRNELRG 927

Query: 201  ---------------DLVW----------------QIASGYFGCRNADGSFNEEKFTTQA 229
                           D+V                 Q+ASG FG           ++ T A
Sbjct: 928  IPIKDGSTLASVIGHDVVEVDTPLLPGDSLRSKIKQVASGRFGVTT--------EYLTSA 979

Query: 230  QSPQIKMIEVKLSQGAKPGHGGVLPAAKITPEIAATRGIPMGVDCISPAVHSSFSTPIGL 289
            +  QIKM     +QGAKPG GG LP  K++  IA  R    GV  ISP  H    +   L
Sbjct: 980  EQIQIKM-----AQGAKPGEGGQLPGHKVSEYIAHLRFSVPGVGLISPPPHHDIYSIEDL 1034

Query: 290  LEFIEKLRSLSAGKPVGIKLCVGHPWEFFSIAKAMLKTGIVP---DFITVDGSEGGTGAA 346
             + I  L++++    + +KL          +    + TG+     D + + G +GGTGA+
Sbjct: 1035 AQLIHDLKNVNPAASISVKLVA-------EVGVGTVATGVAKAKADHVVIAGHDGGTGAS 1087

Query: 347  PLEFVDHVGMPLQEGLVMVHNTLVGIGLRDKVKIGASGKIVTAFDVARTLALGADWCNSA 406
            PL  V + G P + GL     TL+  GLR ++++ A G++ T  DV     LGAD    +
Sbjct: 1088 PLSSVKYAGSPWELGLAETQQTLILNGLRTRIRVQADGQMKTGRDVVIAALLGADEMGFS 1147

Query: 407  RGFMFALGCIQSQSCHTDRCPTGVATQN 434
               +   GCI  + CH + CP GVATQ+
Sbjct: 1148 TAPLVVEGCIMMRKCHLNTCPVGVATQD 1175


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.137    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,025,181
Number of extensions: 43671
Number of successful extensions: 129
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 2
Length of query: 531
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 445
Effective length of database: 716,977
Effective search space: 319054765
Effective search space used: 319054765
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)