BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3529.p
         (318 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095615|ref|YP_001100690.1| putative transcriptional regula...   276   1e-75

>gi|134095615|ref|YP_001100690.1| putative transcriptional regulator
           [Herminiimonas arsenicoxydans]
          Length = 261

 Score =  276 bits (706), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 156/269 (57%), Positives = 184/269 (68%), Gaps = 12/269 (4%)

Query: 26  LKKLYVDPESQESSDINTETIRQMLEELRADWADKGVEVVSLSTGWRFQSRKEMKVYLER 85
           +KKLYV  E      I+ + IRQML+ELR DWADKG+EVVSLSTGWRFQSR EMK+YLER
Sbjct: 1   MKKLYV--EGDADGQIDADAIRQMLDELRDDWADKGIEVVSLSTGWRFQSRPEMKIYLER 58

Query: 86  LNPEKPPKYTRATLETLAIIAYRQPVTRGDIEEIRGVAVNTQTIRMLEDRGWIESIGHRD 145
           LNPEKP KY+RATLETLAII YRQPVTRGDIEEIRGV VN+QTI+MLEDRGWIE+IGHRD
Sbjct: 59  LNPEKPLKYSRATLETLAIITYRQPVTRGDIEEIRGVTVNSQTIKMLEDRGWIEAIGHRD 118

Query: 146 VPGRPALFATTRKFLDDLGLSSLEELPPLQQVSGEAAAQGALLELQALEGGVAALAEQDE 205
           VPGRPALFATT+ FLDDLGLSSL++LPPLQQV         LLE+Q LE  + A  +Q  
Sbjct: 119 VPGRPALFATTKHFLDDLGLSSLDQLPPLQQVEKGDMQGDVLLEMQTLEAEIQAHLDQ-- 176

Query: 206 QEPQEGQADTVDASDTQDVKEVNEMEETQPAEQSPAAEHTDIAAAAGEERAAGS---EDA 262
                   D  DA+ T+ +   NE  + +  E S A +  D A  A  + +A S    +A
Sbjct: 177 -----TAIDFADAAATEGLVAANETADIEITELSIATDAADSADDAVTDTSALSVSESEA 231

Query: 263 SPAVQEPFEQDVAVTGTDANEAAVEAAGE 291
           +PA   P    V VT  D  E   E++ E
Sbjct: 232 TPAHAAPDLTVVDVTSQDNQEVNNESSNE 260


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.307    0.125    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 465,668
Number of extensions: 15170
Number of successful extensions: 45
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 236
Effective length of database: 730,157
Effective search space: 172317052
Effective search space used: 172317052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 129 (54.3 bits)