BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3527.p
         (164 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095612|ref|YP_001100687.1| hypothetical protein HEAR2435 [...   229   5e-62

>gi|134095612|ref|YP_001100687.1| hypothetical protein HEAR2435
           [Herminiimonas arsenicoxydans]
          Length = 172

 Score =  229 bits (584), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 113/164 (68%), Positives = 132/164 (80%), Gaps = 3/164 (1%)

Query: 1   LQLLELIESTLAGLGYELVEFEKAQRGLVRVFIDFPFDPEAEEARSITVEDCEKATHQLL 60
           LQL  LIE T+ G+GYELV FE+A RGLVRV+IDF   PE  +  SITVEDCEK THQLL
Sbjct: 12  LQLSALIEKTVVGMGYELVNFEQAARGLVRVYIDF--TPEDADKGSITVEDCEKVTHQLL 69

Query: 61  HVFTVEDVAYERLEVSSPGLDRPLKKFSDFVRFVDCEAVIKLRVPLPGTSNRKTYEGVLR 120
           HV TVE+  YERLEVSSPGLDRPLKK SD+VRF   EA++KLR+P+P  +NRK+++G+L+
Sbjct: 70  HVLTVENANYERLEVSSPGLDRPLKKLSDYVRFAGAEALVKLRLPMPNAANRKSFQGILQ 129

Query: 121 EPEGEELVLEFEANDGSAAVLNFTLADVDKAHLVPQVDFRSRKG 164
           EP GE L LEFE N+G A  L FTLADVDKAHLVPQV+FRSRK 
Sbjct: 130 EPVGETLALEFEGNEGPAK-LEFTLADVDKAHLVPQVNFRSRKA 172


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.138    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 260,791
Number of extensions: 8402
Number of successful extensions: 22
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 1,000,347
Length adjustment: 75
Effective length of query: 89
Effective length of database: 753,222
Effective search space: 67036758
Effective search space used: 67036758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)