BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3525.p (960 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095610|ref|YP_001100685.1| translation initiation factor I... 1472 0.0 gi|134095256|ref|YP_001100331.1| GTP-binding protein LepA [Hermi... 73 7e-14 gi|134095607|ref|YP_001100682.1| GTP-binding elongation factor f... 68 2e-12 gi|134096335|ref|YP_001101410.1| elongation factor Tu [Herminiim... 64 3e-11 gi|134096323|ref|YP_001101398.1| elongation factor Tu [Herminiim... 64 3e-11 >gi|134095610|ref|YP_001100685.1| translation initiation factor IF-2 [Herminiimonas arsenicoxydans] Length = 941 Score = 1472 bits (3811), Expect = 0.0, Method: Compositional matrix adjust. Identities = 784/976 (80%), Positives = 839/976 (85%), Gaps = 51/976 (5%) Query: 1 MASNNVAQFATELKMPADLLLTQLRSAGVEKSSASDSLSKEDKDRLLEHLRRSRGAAPEG 60 MASNNVAQFATELKMPAD+LLTQLR AGVEKSS SD LSK DKD+LLEHLRR+ G AP+G Sbjct: 1 MASNNVAQFATELKMPADVLLTQLRDAGVEKSSTSDELSKADKDKLLEHLRRAHGVAPDG 60 Query: 61 DKKKITLTRKETTEIKQADATGKSRTIQVEVRKKRTFIKRDEPSVEETAARAAAIQRDAA 120 +KKKITL RKETTEIKQADATGKSRTIQVEVRKKRTF+KRDEP+ EE AA DAA Sbjct: 61 EKKKITLMRKETTEIKQADATGKSRTIQVEVRKKRTFVKRDEPAAEEAPVVVAAPIIDAA 120 Query: 121 AEAQEREQEEARRQAELKA--------QQERLAQLEAERAAQAKA---AELEQQRAREAA 169 ER EE+RR AEL A +QERLA+LEAE+ QAKA AE++ Q+A Sbjct: 121 E--VERRAEESRRHAELMARQEADLREKQERLAKLEAEKETQAKALKKAEVDAQKA---- 174 Query: 170 EAEAKRQAAEAAAAAQAEKAKAAAAAAAPAPAAAAAPAAPAAVDPAVEEKKRAAAEEAKK 229 E +A++ A+AEK P A + A+EEKKR AAEE+KK Sbjct: 175 EVDAQK--------AEAEK-----------------PVEVKADESAIEEKKRVAAEESKK 209 Query: 230 KADAAAKEAADRAAA----AERARKAVEDEVAQIKAMMNAPRRVIKAPEPAAPAAK-TSE 284 KA AAAKEAA A E ARK V DEVAQIKAMMNAPRR IKAPEP AP AK +E Sbjct: 210 KAAAAAKEAAKEANEKAAATELARKVVADEVAQIKAMMNAPRRAIKAPEPVAPVAKPAAE 269 Query: 285 GTLHKPAAGAKPAEKKDDKKPAVAADKKSIKSANVSSTWQDDAKKRGAGGMKSRGATGGG 344 GTLHKPA KP EKKD+KKPAV ADKKSIKSANVSSTWQDDAKKR AG +K+RG TGGG Sbjct: 270 GTLHKPA-DKKPGEKKDEKKPAVTADKKSIKSANVSSTWQDDAKKRSAG-IKTRGNTGGG 327 Query: 345 GRDGWRAGPKGRRHSHGDDQRESNFQVPTEAVVHDVYVPETITVAEVAHKMAVKASEVIK 404 RDGWRAG KGRR SH DD RESNFQ PTEAVV DV VPETITVAE+AHKM+VKASEVIK Sbjct: 328 -RDGWRAGTKGRRQSHHDD-RESNFQAPTEAVVKDVQVPETITVAELAHKMSVKASEVIK 385 Query: 405 HLMKLGQMVTINQVLDQETAMIVVEEMGHRAHAAKLDDPEALLVEGEEHADAEALPRAPV 464 LMKLGQM TINQVLDQETAMI+VEEMGH AHAAKLDDPEALL G E AD EALPRAPV Sbjct: 386 QLMKLGQMCTINQVLDQETAMILVEEMGHVAHAAKLDDPEALLEIGAEQADVEALPRAPV 445 Query: 465 VTVMGHVDHGKTSLLDYIRRTKVASGEAGGITQHIGAYHVETPRGMITFLDTPGHEAFTA 524 VTVMGHVDHGKTSLLDYIRR KVA+GEAGGITQHIGAYHVETPRGMITFLDTPGHEAFTA Sbjct: 446 VTVMGHVDHGKTSLLDYIRRAKVATGEAGGITQHIGAYHVETPRGMITFLDTPGHEAFTA 505 Query: 525 MRARGAKATDIVILVVAADDGVMPQTKEAIAHAKAGGVPLVVAINKIDKPGANPDRVKQE 584 MRARGAKATDIVILVVAADDGVMPQTKEAIAHAKA GVPLVVAINKIDKP AN DRVKQE Sbjct: 506 MRARGAKATDIVILVVAADDGVMPQTKEAIAHAKAAGVPLVVAINKIDKPSANLDRVKQE 565 Query: 585 LIAEEVVPEEYGGDAPFIAVSAKTGEGIDSLLENVLLQAEVLELKAPVDVPARGLVIEAK 644 LIAE+VVPEEYGGD+PF+ VSAKTGEGID+LLE VLLQAEVLELKAPV PARGLV+EAK Sbjct: 566 LIAEQVVPEEYGGDSPFVPVSAKTGEGIDALLEQVLLQAEVLELKAPVVSPARGLVVEAK 625 Query: 645 LDKGRGPVATILVQSGTLKRGDVVLAGSAYGRVRAMLDENGKNIAEAGPSLPVEIQGLTE 704 LDKGRGPVATILVQSGTL+RGDVVLAGSAYGRVRAMLDENGK+I+EAGPS+PVEIQGLTE Sbjct: 626 LDKGRGPVATILVQSGTLRRGDVVLAGSAYGRVRAMLDENGKSISEAGPSIPVEIQGLTE 685 Query: 705 VPSAGEEVVVMTDERKAREIGLFRQGKFRDVKLAKQQAAKLENMFDQMTEGEVKTLPMII 764 VP+AGEEV+VM DERKAREIGLFRQGKFRDVKLAKQQAAKLENMF+ M EGEVK LPMII Sbjct: 686 VPNAGEEVMVMADERKAREIGLFRQGKFRDVKLAKQQAAKLENMFENMGEGEVKNLPMII 745 Query: 765 KTDVQGSQEALVQSLQKLSTAEVRVQVVHAAVGGISENDVNLAVASKAVIIGFNTRADAS 824 KTDVQGSQEALV SLQKLST EVRVQVVHAAVGGISE+DVNLAVASKAVIIGFNTRADAS Sbjct: 746 KTDVQGSQEALVGSLQKLSTGEVRVQVVHAAVGGISESDVNLAVASKAVIIGFNTRADAS 805 Query: 825 ARKLAEASGVDIRYYNIIYDAVDEVKAAMSGMLSPEKREQALGLVEIRQVFVVSKVGSIA 884 ARKLAEA+GVDIRYYNIIYDAVDE+KAAMSGMLSPEKREQALGLVEIRQV +VSKVG+IA Sbjct: 806 ARKLAEANGVDIRYYNIIYDAVDEIKAAMSGMLSPEKREQALGLVEIRQVILVSKVGAIA 865 Query: 885 GCYVLEGLVKRGSQVRLLRNNVVVWTGELDSLKRFKDDVKEVKSGFECGLSLKGYNDIEV 944 GCYVLEG+VKRG+ VRLLR+NVV+WTGELDSLKRFKDD KEVK GFECGL+LK +NDI+ Sbjct: 866 GCYVLEGVVKRGASVRLLRDNVVIWTGELDSLKRFKDDAKEVKFGFECGLTLKNFNDIKE 925 Query: 945 GDQLEIFEVQEVARTL 960 GDQLE+FEVQE+ARTL Sbjct: 926 GDQLEVFEVQEIARTL 941 >gi|134095256|ref|YP_001100331.1| GTP-binding protein LepA [Herminiimonas arsenicoxydans] Length = 597 Score = 72.8 bits (177), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 107/226 (47%), Gaps = 41/226 (18%) Query: 465 VTVMGHVDHGKTSLLDYIRRTKVASGEAGGIT------QHIGAYHVETPRGM-------- 510 +++ H+DHGK++L D I + GG++ Q + + +E RG+ Sbjct: 7 FSIIAHIDHGKSTLADRIIQL------CGGLSDREMEAQVLDSMDLERERGITIKAQTAA 60 Query: 511 ------------ITFLDTPGHEAFTAMRARGAKATDIVILVVAADDGVMPQTKEAIAHAK 558 + +DTPGH F+ +R A + +LVV A GV QT A Sbjct: 61 LTYKARDGQVYNLNLIDTPGHVDFSYEVSRSLSACEGALLVVDASQGVEAQTVANCYMAL 120 Query: 559 AGGVPLVVAINKIDKPGANPDRVKQELIAEEVVPEEYGGDAP-FIAVSAKTGEGIDSLLE 617 GV +V +NKID P A+P E+ E+V+ G DA + SAKTG G+ +LE Sbjct: 121 DLGVEVVPVLNKIDLPNADPPAAMAEI--EDVI----GIDATDAVQCSAKTGLGVADVLE 174 Query: 618 NVLLQAEVLELKAPVDVPARGLVIEAKLDKGRGPVATILVQSGTLK 663 ++ A+V K D P + L++++ D G V + V +GTLK Sbjct: 175 ALI--AKVPPPKGDPDAPLQALIVDSWFDNYVGVVMLVRVVNGTLK 218 >gi|134095607|ref|YP_001100682.1| GTP-binding elongation factor family protein [Herminiimonas arsenicoxydans] Length = 612 Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/128 (35%), Positives = 63/128 (49%), Gaps = 16/128 (12%) Query: 465 VTVMGHVDHGKTSLLDYIRRTK-------------VASGEA---GGITQHIGAYHVETPR 508 + ++ HVDHGKT+L+D + R + SG+ GIT VE Sbjct: 11 IAIIAHVDHGKTTLVDQLLRQSGTFRDNQQIDARVMDSGDIEKERGITILSKNCAVEYKG 70 Query: 509 GMITFLDTPGHEAFTAMRARGAKATDIVILVVAADDGVMPQTKEAIAHAKAGGVPLVVAI 568 I +DTPGH F R D V+L+V A +G MPQT+ A A G+ +V + Sbjct: 71 THINIVDTPGHADFGGEVERVLSMVDSVLLLVDAQEGPMPQTRFVTRKALALGLKPIVVL 130 Query: 569 NKIDKPGA 576 NKID+PGA Sbjct: 131 NKIDRPGA 138 >gi|134096335|ref|YP_001101410.1| elongation factor Tu [Herminiimonas arsenicoxydans] Length = 396 Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 62/165 (37%), Positives = 76/165 (46%), Gaps = 25/165 (15%) Query: 465 VTVMGHVDHGKTSLLDYIRR--TKVASGEAGGITQ------------HIGAYHVE--TPR 508 V +GHVDHGKT+L I +K GEA G Q I HVE T Sbjct: 15 VGTIGHVDHGKTTLTAAIATVLSKKFGGEAKGYDQIDNAPEEKARGITINTSHVEYETTT 74 Query: 509 GMITFLDTPGHEAFTAMRARGAKATDIVILVVAADDGVMPQTKEAIAHAKAGGVP-LVVA 567 +D PGH + GA D ILV +A DG MPQT+E I A+ GVP ++V Sbjct: 75 RHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIIVF 134 Query: 568 INKIDKPGANPDRVKQELIAEEV--VPEEY---GGDAPFIAVSAK 607 +NK D D EL+ EV + +Y G D P I SAK Sbjct: 135 LNKCD---MVDDAELLELVEMEVRELLSKYEFPGDDLPIIKGSAK 176 >gi|134096323|ref|YP_001101398.1| elongation factor Tu [Herminiimonas arsenicoxydans] Length = 396 Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 62/165 (37%), Positives = 76/165 (46%), Gaps = 25/165 (15%) Query: 465 VTVMGHVDHGKTSLLDYIRR--TKVASGEAGGITQ------------HIGAYHVE--TPR 508 V +GHVDHGKT+L I +K GEA G Q I HVE T Sbjct: 15 VGTIGHVDHGKTTLTAAIATVLSKKFGGEAKGYDQIDNAPEEKARGITINTSHVEYETTT 74 Query: 509 GMITFLDTPGHEAFTAMRARGAKATDIVILVVAADDGVMPQTKEAIAHAKAGGVP-LVVA 567 +D PGH + GA D ILV +A DG MPQT+E I A+ GVP ++V Sbjct: 75 RHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIIVF 134 Query: 568 INKIDKPGANPDRVKQELIAEEV--VPEEY---GGDAPFIAVSAK 607 +NK D D EL+ EV + +Y G D P I SAK Sbjct: 135 LNKCD---MVDDAELLELVEMEVRELLSKYEFPGDDLPIIKGSAK 176 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.311 0.127 0.338 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,324,149 Number of extensions: 52367 Number of successful extensions: 177 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 170 Number of HSP's successfully gapped: 5 Length of query: 960 Length of database: 1,000,347 Length adjustment: 91 Effective length of query: 869 Effective length of database: 700,502 Effective search space: 608736238 Effective search space used: 608736238 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 133 (55.8 bits)