BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3522.p
         (334 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095608|ref|YP_001100683.1| tRNA pseudouridine 5S synthase ...   443   e-126

>gi|134095608|ref|YP_001100683.1| tRNA pseudouridine 5S synthase
           [Herminiimonas arsenicoxydans]
          Length = 314

 Score =  443 bits (1140), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/303 (71%), Positives = 254/303 (83%), Gaps = 1/303 (0%)

Query: 31  RPPRVPVHGVLLLDKPVGLSSNDALIRAKRMINAPKAGHTGTLDPFATGLLSLCFGEATK 90
           +  RVPVHGVLLLDK  G+SSNDALI+AK ++NA KAGHTGTLDPFATGLL LCFGEATK
Sbjct: 7   KKKRVPVHGVLLLDKQAGVSSNDALIKAKWLLNALKAGHTGTLDPFATGLLPLCFGEATK 66

Query: 91  FSQDLLEADKTYEAIVHLGVRTDTGDTEGQVISERAVEVSLEQIEAVLAQFRGPISQVPP 150
           F+QDLL+ADKTYE +VHLGV T+TGDTEG VI+  AV++S +QI+AVLAQFRG I QVPP
Sbjct: 67  FAQDLLDADKTYETVVHLGVTTNTGDTEGDVIATHAVDISRQQIDAVLAQFRGDIEQVPP 126

Query: 151 MHSALKRDGKPLYEYARAGITLEREARNVTIHALELLDYRAPMLRIRVTCSKGTYIRVLG 210
           M+SALKRDGKPLYEYARAGITLEREAR VTIH LE +D++AP L +RV CSKGTYIRVLG
Sbjct: 127 MYSALKRDGKPLYEYARAGITLEREARPVTIHLLEFVDFQAPFLTLRVRCSKGTYIRVLG 186

Query: 211 EDIGELLGCGAHLNALRRTGVGALTLDGAVTLEAFEAAGELEARKALLLPVDGLLRSFPA 270
           EDIG  LGCGAHLNALRR  VG L +  A+T+E    A + +AR A L  VD LL SFPA
Sbjct: 187 EDIGAALGCGAHLNALRRIQVGDLLIAQAITIEEL-TAKDADARIAALASVDALLTSFPA 245

Query: 271 VQLTDELARRFLHGQRLPLGKEGVAVPEQTGRVRVYRSSDAALLGTGLLQEYAILAPERL 330
           ++L++ELA+RFLHGQRL LGKE + +PE  GR+R+YR SD  LLGTGL+QEY+ILAPERL
Sbjct: 246 LRLSEELAKRFLHGQRLALGKENIVLPEGQGRMRIYRESDGQLLGTGLMQEYSILAPERL 305

Query: 331 VST 333
           +ST
Sbjct: 306 IST 308


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 544,849
Number of extensions: 22025
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 252
Effective length of database: 730,157
Effective search space: 183999564
Effective search space used: 183999564
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)