BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3520.p
         (331 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096247|ref|YP_001101322.1| hypothetical protein HEAR3092 [...    94   8e-21

>gi|134096247|ref|YP_001101322.1| hypothetical protein HEAR3092
           [Herminiimonas arsenicoxydans]
          Length = 807

 Score = 94.0 bits (232), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 115/242 (47%), Gaps = 10/242 (4%)

Query: 94  LLLAGSEFLEQDGRQARLLPGDLAIYDAARPHRLIFPEDFRKLILQIPRHDMERRIGRMR 153
           +L  G   ++     A +  GD+ + D++R  +L     FR  ++++ + +   R+    
Sbjct: 86  VLFEGVGQIDVGAETAAVSAGDIYLLDSSRQWKLALTSAFRASVIRLEKANFISRLMHTG 145

Query: 154 HVTARVVDARAGAGALAANFVRAVAASPQEPIPGQHSVLAQQIVDLLVLAIGGASAPQLC 213
                 + + +G G +A  FV A+         G    +   +  +LV ++       + 
Sbjct: 146 KTDICKISSASGVGNIALEFVNAITCQLASLGSGDLEQMEDALSTMLVASLAHKEEEDVS 205

Query: 214 AAGNRAQS-LARVKAFIDAHLCDPGLDSALVAASAGLSSRYVNQLFEDEDTSLMRYVLRR 272
            + +   S L R+   I+A L DP L +  +A S  LS+RY+ +LF    T+   YV +R
Sbjct: 206 HSTSMQLSHLRRICRTIEARLTDPELSAIDIARSEQLSARYLQKLFASAGTTFGEYVKKR 265

Query: 273 RLEHCHDELLHAG-RNGRMYDIALRWGFNDPSHFSRAFRKQFGGSPRNLR--------RY 323
           RL+ C  +L +   ++  + ++  RWGFND ++FSRAF  +FG SP+  R        RY
Sbjct: 266 RLDRCRIDLSNLSLKHLTISELCFRWGFNDAANFSRAFHLEFGISPKGYRSQPKSVTKRY 325

Query: 324 EI 325
           E+
Sbjct: 326 EL 327


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 542,447
Number of extensions: 18864
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 249
Effective length of database: 730,157
Effective search space: 181809093
Effective search space used: 181809093
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)