BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3517.p
         (294 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093853|ref|YP_001098928.1| hypothetical protein HEAR0601 [...    68   5e-13

>gi|134093853|ref|YP_001098928.1| hypothetical protein HEAR0601
           [Herminiimonas arsenicoxydans]
          Length = 271

 Score = 68.2 bits (165), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 99/225 (44%), Gaps = 22/225 (9%)

Query: 69  SSNVALARYIHVVKLSDNAVLDPQFILPFGHLSTSGELSALGNASGTGDLILGAPVKFIL 128
           S N+AL   IHV K S +        LP+G   T+         +G GD+ LG     + 
Sbjct: 66  SWNIALPD-IHVRKTSGS--------LPYGFGDTT---------NGLGDVRLGYTFWPVN 107

Query: 129 NQSTHDVFAIGPYVYLPTGQYDSNKFINLGENRWKGLLQLAYIRHFNPQWALDLVGDATV 188
           +  +    AI   + +P+  YD+++ +N G+NRW+  LQL +I+  +     D V + + 
Sbjct: 108 DTESGRSLAIASTLQIPSADYDNSQSLNAGDNRWRATLQLGWIQKLSSTLTFDFVPEVSF 167

Query: 189 FGENTDYTPAHAALKQATRYELQAHLRYNISPATSLSVGVGNVRGGETELNGVKQGDRLD 248
           +  N ++      + Q   Y    +LR+   P    +VG    RGG   +NG    +   
Sbjct: 168 YSPNHNF--VGFGMTQKPTYAATTYLRWRFMPIWEANVGFQANRGGAQNINGYVLDNERR 225

Query: 249 TTYARLTVTSFVAPTVQLQMQYGRDLSVENGLKEKNR--VNFRIV 291
                L +++ ++  +   ++Y  D S+   LK  +   +NF  V
Sbjct: 226 QQRVFLGLSTALSKNIFTGLRYSHDTSIGYELKTTSDLVLNFHYV 270


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 589,911
Number of extensions: 25633
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 213
Effective length of database: 733,452
Effective search space: 156225276
Effective search space used: 156225276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)