BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3514.p
         (626 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093915|ref|YP_001098990.1| putative sodium:solute symporte...   409   e-115
gi|134095801|ref|YP_001100876.1| putative solute:Na+ symporter [...    96   5e-21

>gi|134093915|ref|YP_001098990.1| putative sodium:solute symporter;
           putative pantothenate transporter [Herminiimonas
           arsenicoxydans]
          Length = 508

 Score =  409 bits (1051), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/472 (47%), Positives = 310/472 (65%), Gaps = 22/472 (4%)

Query: 35  RALTIAVFAIFFGFTLFITYLASKRNKTATDFYTAGGGIGPIRNGLAIAGDYLSAAAFLG 94
           + LT+ +F +    TL +TY A++R  TA++FY AGG +    NG A+AGD++SAAAFLG
Sbjct: 2   KLLTLGIFILILALTLLVTYWAARRTNTASEFYAAGGNLSAKENGFALAGDWMSAAAFLG 61

Query: 95  VSGLIALYGYDGIAYLIGFFVAFIPVLLLVAEPCRNLGKYTLGDVLAFRNSFRSTKIAAA 154
            +GL ALYG DG  Y +    AF+ +L++VAEP RN G+YTLGDV+A+R      ++AA 
Sbjct: 62  FTGLTALYGMDGSLYAVSALAAFLLILMVVAEPIRNTGRYTLGDVIAYRMQRPQARLAAV 121

Query: 155 VSSIIVAVFYMVPQIVGGAVIIRALIGIPYEVSVLAVGLLMLTYVVFGGMRATTSVQVIK 214
           V + IV + YM+PQ+ G   +++ L+G+PY  +V+ VG+ M+ YV FGGM ATT VQ+IK
Sbjct: 122 VGTAIVNIAYMIPQLAGAGALMKLLLGVPYSTAVIFVGIGMVVYVRFGGMIATTWVQIIK 181

Query: 215 AVLLISSCFILVILSWAPFGFNVSEFFSVLTKNSSVQSYVSEVLLKGAAALGPADAGQRF 274
           AVLL+++  +LV    A  GFN  + FS+      +Q                       
Sbjct: 182 AVLLLATATVLVTWLLAEVGFNPLKLFSIAEDKYGLQ----------------------M 219

Query: 275 LESGLYLKNPLEQVSLGLALVLGTAAMPHILMRFFTVPDAKSARSSVLWAMLAIGVCHLL 334
           L  G YLK+PL+  SL L+L++GTA +PHI+ RFFTVPDAK+AR SV+W M   G   L 
Sbjct: 220 LAPGNYLKHPLDAFSLSLSLIVGTAGLPHIMTRFFTVPDAKTARKSVIWLMFLAGTFFLA 279

Query: 335 IVVIGFAAAHYVGAKAITLLDKGGNLAAPMLAQFLGGGTDSLLGNFMLAFVAAVSFATIV 394
             +IGFAAA +VG  AI  +DKGGNLA P+LAQ LGGG  S+ G   LA V AV+FATI+
Sbjct: 280 TTLIGFAAAIFVGQDAIRAVDKGGNLALPLLAQTLGGGAGSIGGEIFLAVVCAVAFATIL 339

Query: 395 AVVAGLTLAAASALAHDVYVGAIKNGKATEQEQVRAARVATLMMSVICVACGILAKGQNV 454
           AVVAGLTLA +  +AHD+YV  I+ GK +E +QVR A+++TL + VI  A G+LA+G NV
Sbjct: 340 AVVAGLTLATSGTVAHDLYVNVIRQGKVSEADQVRIAKLSTLAIGVIATALGLLAEGVNV 399

Query: 455 AHLVGLGYAVAASANLPALMLTLYWKRCSTAGVLAGVIGGTFLAIALVLVSP 506
           A LV L  ++AASAN P ++L+L+W+R +TAGV+ G+  G   A  L  + P
Sbjct: 400 AVLVILAISIAASANFPVIVLSLFWRRFNTAGVIGGITVGLVSAAGLAFIGP 451


>gi|134095801|ref|YP_001100876.1| putative solute:Na+ symporter
           [Herminiimonas arsenicoxydans]
          Length = 678

 Score = 95.9 bits (237), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 103/174 (59%), Gaps = 6/174 (3%)

Query: 59  RNKTATDFYTAGGGIGPIRNGLAIAGDYLSAAAFLGVSGLIALYGYDGIAYLIGFFVAFI 118
           R     ++Y AG  +    NG+A A D++SAA+F+ ++G + L+G+DG+AYL+G+   F+
Sbjct: 61  RTSNMLEYYVAGRRVPAFFNGMATAADWISAASFISLAGGLYLWGFDGLAYLMGWTGGFV 120

Query: 119 PVLLLVAEPCRNLGKYTLGDVLAFRNSFRST----KIAAAVSSIIVAVFYMVPQIVGGAV 174
            V LL+A   R  G+YT+ D LA R + R +    +I A +++I+V+  Y+V QI G  +
Sbjct: 121 LVALLIAPYLRKFGQYTIPDYLAARYTGRYSDNVVRIIAVIATILVSFTYVVAQIYGVGL 180

Query: 175 IIRALIGIPYEVSVLAVGLLMLTYVVF-GGMRATTSVQVIKAVLLISSCFILVI 227
           I     G+ + V +  +GL  +    F GGMRA T  QV + +++I +  I V+
Sbjct: 181 ITSRFTGVDFSVGIF-LGLASILVCSFLGGMRAVTWTQVAQYIIIIIAYMIPVV 233


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.326    0.138    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,038,871
Number of extensions: 40700
Number of successful extensions: 214
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 3
Length of query: 626
Length of database: 1,000,347
Length adjustment: 87
Effective length of query: 539
Effective length of database: 713,682
Effective search space: 384674598
Effective search space used: 384674598
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)