BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3506.p
         (124 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095298|ref|YP_001100373.1| transposase (partial) [Herminii...   158   6e-41
gi|134095718|ref|YP_001100793.1| transposase (partial) [Herminii...   155   5e-40
gi|134093907|ref|YP_001098982.1| transposase (partial) [Herminii...    54   3e-09

>gi|134095298|ref|YP_001100373.1| transposase (partial)
           [Herminiimonas arsenicoxydans]
          Length = 122

 Score =  158 bits (400), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 76/120 (63%), Positives = 97/120 (80%)

Query: 4   VALLGTTRRWYIRDHLSIREIAGRLDISRNTVHRYIRSDAIEPAYPTRRSPSSLNEFAPR 63
           +ALLG  RRW++RD +S+REI+ RL ISRNTV RY+R++ +EPAY  RRSP+SL+++A +
Sbjct: 1   MALLGIIRRWHLRDQVSLREISKRLGISRNTVRRYLRAETVEPAYADRRSPTSLDKYAFK 60

Query: 64  LPAWLSSESVKYRKQRRTLKQMFLDLKELGYEGSYDRVVAFARRSKVGHMERGKSASKST 123
           L AWL +E+ K RKQRRTLKQM +DL  LG+EGSYDRV AFAR+ KV  +ER  SASKST
Sbjct: 61  LSAWLKTEATKSRKQRRTLKQMHIDLCALGFEGSYDRVAAFARQWKVDQLERVNSASKST 120


>gi|134095718|ref|YP_001100793.1| transposase (partial)
           [Herminiimonas arsenicoxydans]
          Length = 131

 Score =  155 bits (392), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 73/120 (60%), Positives = 96/120 (80%)

Query: 4   VALLGTTRRWYIRDHLSIREIAGRLDISRNTVHRYIRSDAIEPAYPTRRSPSSLNEFAPR 63
           +ALLG  RRW++RD +S+RE++ RL ISRNTV RY+R++ +EPAY  RRSP+SL+++A +
Sbjct: 1   MALLGIIRRWHLRDQVSLREVSKRLSISRNTVRRYLRAETVEPAYADRRSPTSLDKYAFK 60

Query: 64  LPAWLSSESVKYRKQRRTLKQMFLDLKELGYEGSYDRVVAFARRSKVGHMERGKSASKST 123
           L AWL++E+ K RKQRRTLKQM +DL  LG+EGSYDRV AF R+ K   +ER  SASKST
Sbjct: 61  LSAWLTTETTKSRKQRRTLKQMHIDLYALGFEGSYDRVAAFDRQWKADQLERVNSASKST 120


>gi|134093907|ref|YP_001098982.1| transposase (partial)
           [Herminiimonas arsenicoxydans]
          Length = 40

 Score = 53.5 bits (127), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/39 (69%), Positives = 30/39 (76%)

Query: 85  MFLDLKELGYEGSYDRVVAFARRSKVGHMERGKSASKST 123
           M LDL+ELGYE SYDRV AFAR+ KV  +ER  SASK T
Sbjct: 1   MHLDLRELGYERSYDRVTAFARQWKVDQLERVNSASKLT 39


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 212,727
Number of extensions: 6995
Number of successful extensions: 26
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 3
Length of query: 124
Length of database: 1,000,347
Length adjustment: 71
Effective length of query: 53
Effective length of database: 766,402
Effective search space: 40619306
Effective search space used: 40619306
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)