BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3505.p (308 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094049|ref|YP_001099124.1| putative glyoxylate reductase (... 87 1e-18 gi|134096589|ref|YP_001101664.1| formate dehydrogenase [Herminii... 84 7e-18 gi|134096490|ref|YP_001101565.1| putative phosphoglycerate dehyd... 84 1e-17 gi|134096368|ref|YP_001101443.1| phosphonate dehydrogenase [Herm... 83 2e-17 gi|134096605|ref|YP_001101680.1| glyoxylate reductase [Herminiim... 78 7e-16 >gi|134094049|ref|YP_001099124.1| putative glyoxylate reductase (glycolate reductase) [Herminiimonas arsenicoxydans] Length = 327 Score = 87.0 bits (214), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 115/240 (47%), Gaps = 20/240 (8%) Query: 51 EFLAALPRLKVLFSSGAGVDHIDMTVVPPHVAIVRMVEPGIIN-GMLEYVTMSVLALHRH 109 E + A P+LK + + G ++ID+ I+ P ++N +Y ++A R Sbjct: 60 EVITANPQLKAICNVAVGYNNIDVAAATK-AGIMVTNTPDVLNETTADYAWTLLMANARR 118 Query: 110 LFEYQEFQRQGLWQP--------IEVYPPSTCSVGVMGLGVLGQAVLERLGVFGYRRLGW 161 E + + R G W+ +V+ ++G++G+G +GQA+ R F + + Sbjct: 119 TSESEHYLRAGKWKNWRFDQFLGADVHG---ATLGILGMGRIGQAIARRSMGFDMQVIYH 175 Query: 162 NRSPRSLPDVRCFEGEK---ALNEFLRQCDILICLLPLTDATRGILGKRLFATLPAGSSL 218 NRS R PD + E LR D LI +LP ++ T I+G A + ++L Sbjct: 176 NRS-RLTPDQEAHANNARYVSKEELLRTADHLILVLPYSEQTHHIIGAAELALMKPTATL 234 Query: 219 LHVGRGGHLDQDALLDALDRGQLGRAVLDVCDPEPLPVDHP-LWRHPRVVLTPHVASMTQ 277 +++ RGG +D AL+ AL ++ A LDV + EP HP VVLTPH+ S ++ Sbjct: 235 VNIARGGIVDDVALIAALREHRIASAGLDVYENEPAL--HPDFLTLSNVVLTPHIGSASE 292 >gi|134096589|ref|YP_001101664.1| formate dehydrogenase [Herminiimonas arsenicoxydans] Length = 400 Score = 84.3 bits (207), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 59/232 (25%), Positives = 101/232 (43%), Gaps = 6/232 (2%) Query: 51 EFLAALPRLKVLFSSGAGVDHIDMTVVPPHVAIVRMVEPGIINGMLEYVTMSVLALHRHL 110 E +A +LK++ ++G G DH D+ H V V + + E+V M +L+ R+ Sbjct: 107 ERIAKAKKLKMIVTAGIGSDHTDLEAANKHNITVAEVTYCNSHSVAEHVLMMILSQVRNY 166 Query: 111 FEYQEFQRQGLWQPIEV----YPPSTCSVGVMGLGVLGQAVLERLGVFGYR--RLGWNRS 164 + G W + Y SVG + G +G VL L F + + +R Sbjct: 167 IPSYKQVIDGGWNIADCVSRSYDLEAMSVGTVAAGRIGLRVLRLLHPFDVKLHYMDRHRL 226 Query: 165 PRSLPDVRCFEGEKALNEFLRQCDILICLLPLTDATRGILGKRLFATLPAGSSLLHVGRG 224 P ++ L + CD++ PL T ++ ++ G+ +++ RG Sbjct: 227 PTAVEKELNLTYHSTLESLTKVCDVVTLNCPLHPETEHMINEKTLKNFKRGAYIINTARG 286 Query: 225 GHLDQDALLDALDRGQLGRAVLDVCDPEPLPVDHPLWRHPRVVLTPHVASMT 276 D+DA++ AL GQL DV P+P P +HP P +TPH++ + Sbjct: 287 KLCDRDAIVAALKSGQLAGYAGDVWFPQPAPKNHPWRTMPHHGMTPHISGTS 338 >gi|134096490|ref|YP_001101565.1| putative phosphoglycerate dehydrogenase(partial) [Herminiimonas arsenicoxydans] Length = 317 Score = 83.6 bits (205), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 76/263 (28%), Positives = 116/263 (44%), Gaps = 16/263 (6%) Query: 35 GNLEEIEYLIAWQVPPEFLAALPRLKVLFSSGAGVDHIDMTVVPPHVAIVRMVEPGIING 94 GN++ + +V L A P+L+V+ G G+D+ID+ V Sbjct: 49 GNVDALIVRNRTKVDIALLDAAPKLRVVGRLGVGLDNIDVDACKARGIDVFPATGANAGA 108 Query: 95 MLEYVTMSVLALHRHLFEYQEFQRQGLW------QPIEVYPPSTCSVGVMGLGVLGQAVL 148 + EYV + +AL R + G W E+ + +G G+G L + Sbjct: 109 VAEYVIGTAMALLREAYTRSAETAAGTWPRTALSNGREIAGKTLGLIGFGGIGQLTARLA 168 Query: 149 ERLGVFGYRRLGWNRSPRSLPDVRCFEGE----KALNEFLRQCDILICLLPLTDATRGIL 204 + LGV P PD ++ K L+E L Q DI+ +PLT TR ++ Sbjct: 169 QALGVTVIAH-----DPLLAPDAAIWQQAGVACKQLHEVLEQADIVSLHIPLTTNTRNLI 223 Query: 205 GKRLFATLPAGSSLLHVGRGGHLDQDALLDALDRGQLGRAVLDVCDPEPLPVDHPLWRHP 264 G A + + L++ RG +D+ AL AL LG A +DV EPL + L P Sbjct: 224 GADALARMKPDAVLINTSRGEIVDEAALAQALHSANLGGAAIDVFAQEPLAPGNALANAP 283 Query: 265 RVVLTPHVASM-TQPETAIPILI 286 RV+LTPH+A + T+ T + LI Sbjct: 284 RVILTPHIAGVTTESNTRVSALI 306 >gi|134096368|ref|YP_001101443.1| phosphonate dehydrogenase [Herminiimonas arsenicoxydans] Length = 336 Score = 82.8 bits (203), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/247 (27%), Positives = 122/247 (49%), Gaps = 25/247 (10%) Query: 47 QVPPEFLAALPRLKVLFSSGAGVDHIDMTVVPPHVAIVRMVEPGIINGML-----EYVTM 101 V FLAA P+LK++F++ G D+ D+ R V GI+ +L E Sbjct: 56 SVDDSFLAACPKLKIVFAALKGYDNFDVDACTK-----RGVWFGIVPDLLTVPTAELTVG 110 Query: 102 SVLALHRHLFEYQEFQRQGL---WQPIEVYPP--STCSVGVMGLGVLGQAVLERLGVFGY 156 +L L RH+ + R G W+P ++Y + ++G++G+G +G+A+ +RL F Sbjct: 111 LLLGLTRHVMAGDDHVRSGTFHGWRP-KLYGAGLAGSTIGIIGMGRVGKAIAKRLSGFEM 169 Query: 157 RRLGWNRSPRSLPDVRCFEGEK-ALNEFLRQCDILICLLPLTDATRGILGKRLFATLPAG 215 + + P + D + + + + +E L D ++ +LP+T T ++ + + G Sbjct: 170 NAVYCDSVPLNPVDEQAWNARQVSFDELLTCSDFVVPMLPMTSDTFHLIDAHAISKMRRG 229 Query: 216 SSLLHVGRGGHLDQDALLDALDRGQLGRAVLDVCDPE-------PLPVDHPLWRH-PRVV 267 S LL+ RG +D++A+++AL++G L DV + E PL V L + + + Sbjct: 230 SYLLNTSRGSVVDENAVVEALNQGHLAGYAADVFEMEEWARPDRPLTVPQALLNNRTQTL 289 Query: 268 LTPHVAS 274 TPHV S Sbjct: 290 FTPHVGS 296 >gi|134096605|ref|YP_001101680.1| glyoxylate reductase [Herminiimonas arsenicoxydans] Length = 327 Score = 77.8 bits (190), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 94/212 (44%), Gaps = 12/212 (5%) Query: 71 HIDMTVVPP-HVAIVRMVEPGIINGMLEYVTMSVLALHRHLFEYQEFQRQGLWQPIEVYP 129 HID++ ++ IV V G E ++A R L +Y + GLWQ + Sbjct: 82 HIDLSAAAARNITIVEGV--GDPTAPAELTWALIMAAMRKLPQYVGNLKDGLWQIASLSS 139 Query: 130 PSTC--------SVGVMGLGVLGQAVLERLGVFGYRRLGWNRSPRSLPDVR-CFEGEKAL 180 ++G+ G G +G+ V FG + L W R V+ ++ + Sbjct: 140 AHNTLGAVLKGRTLGIWGYGRIGRMVAGYGQAFGMKVLVWGRDASRAAAVQDGYQAASSR 199 Query: 181 NEFLRQCDILICLLPLTDATRGILGKRLFATLPAGSSLLHVGRGGHLDQDALLDALDRGQ 240 EF D+L L L DATRGI+ A + + + ++ R + DAL AL++G+ Sbjct: 200 EEFFSTADVLSLHLRLNDATRGIVTASDLAHMKSSALFVNTSRAELVASDALQTALEQGR 259 Query: 241 LGRAVLDVCDPEPLPVDHPLWRHPRVVLTPHV 272 G A LDV + EPL L R V+ +PH+ Sbjct: 260 PGYAALDVFESEPLAPTSSLLRMENVLASPHL 291 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.325 0.142 0.451 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 620,580 Number of extensions: 25439 Number of successful extensions: 103 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 94 Number of HSP's successfully gapped: 5 Length of query: 308 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 227 Effective length of database: 733,452 Effective search space: 166493604 Effective search space used: 166493604 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 128 (53.9 bits)