BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3503.p
         (322 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096021|ref|YP_001101096.1| threonine deaminase [Herminiimo...   167   9e-43

>gi|134096021|ref|YP_001101096.1| threonine deaminase [Herminiimonas
           arsenicoxydans]
          Length = 507

 Score =  167 bits (422), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 102/299 (34%), Positives = 166/299 (55%), Gaps = 7/299 (2%)

Query: 26  TPLLRAEKIEKAVGCQLYLKPEVLQITGAFKIRGALNKALSLSRDEIANGLIATSSGNHA 85
           +PL  A  + +  G Q+Y K E +Q   +FK+RGA NK   L   ++  G+I  S+GNHA
Sbjct: 21  SPLELAPTLSQRFGNQIYFKREDIQSVFSFKLRGAYNKMAHLPPAQMKRGVICASAGNHA 80

Query: 86  QGIAYAAKMLGVKATIVVPVTTPKIKIENTQALGAEVILFDGDTAARWEKVCDIAEENKY 145
           QG+A +A  LG +A IV+P TTP +KIE  +A G EV+LF    +  ++    + ++ K 
Sbjct: 81  QGVALSAARLGCRAVIVMPTTTPSVKIEAVKARGGEVVLFGDSYSDAYQHALTLEKKLKL 140

Query: 146 MAVHGFEDPMVMAGQGTIGCEILEDLED-VDTIIIPLGGGGLISGIATAIKETNPSVRVI 204
             VH F+DP V+AGQGTIG EIL      +  I +P+GGGGLI+GI   +K   P +++I
Sbjct: 141 TFVHPFDDPDVIAGQGTIGMEILRQHSGPIHAIFVPIGGGGLIAGIGAYVKAVRPDIKII 200

Query: 205 GAEPALTPKYYQSRINQERISLPLKNTIADGVRISVPGQNPFPIIEKYVDEIVLVEDEHI 264
           G +   +    +S  +  R+++      ADG  + + G+  F + + YVD+I+LV  + +
Sbjct: 201 GVQTVDSDAMARSLQSNRRVTMTDVGLFADGTAVKLVGEETFRLAKLYVDDIILVSTDEV 260

Query: 265 IAGMRALAKDAKLIAEPAASIGLGALLAGSVKVRPDEK------VCLVLSGGNWNLSDL 317
            + ++ + +D + I EP+ ++ +    A   +   D+K      +  + SG N N   L
Sbjct: 261 CSAIKDVFQDTRSILEPSGALSVAGAKAYIERAHADKKPIKNETLITIASGANMNFDRL 319


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 552,796
Number of extensions: 20200
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 240
Effective length of database: 730,157
Effective search space: 175237680
Effective search space used: 175237680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)