BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3497.p (597 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093308|ref|YP_001098383.1| putative methyl-accepting chemo... 249 2e-67 gi|134093834|ref|YP_001098909.1| putative methyl-accepting chemo... 247 1e-66 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 243 1e-65 gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 235 6e-63 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 227 1e-60 >gi|134093308|ref|YP_001098383.1| putative methyl-accepting chemotaxis sensory transducer [Herminiimonas arsenicoxydans] Length = 633 Score = 249 bits (637), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 143/284 (50%), Positives = 201/284 (70%) Query: 313 SGDLTQRLPDQGKDEVAVISRSFNQFVGQLQNVMLDIRDASEAVRMASNEIATANQDLST 372 +GDLT RL + DE+ ++ R+ N L NV+ +IR +E + + EIA N DLS+ Sbjct: 218 TGDLTSRLETKRTDEIGLLLRAVNSIGQGLANVVWNIRHGTETLATETREIAAGNLDLSS 277 Query: 373 RTESAAASLEQTAASMAEISETVSRSTAAAKQADQRSSSATEIASQGGKVVSDAVTTIGE 432 RTE A+SLE+TA++M E++ TV + A A+QA+ + +A E+A +GG VV++ V T+ Sbjct: 278 RTEQQASSLEETASAMEEMTSTVKENAANAEQANALAHTAAEVAIKGGNVVAEVVHTMDS 337 Query: 433 IEKVSSQIGAIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAHEVRSLAKRSAEA 492 I + S +I II+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LA+RS+ A Sbjct: 338 INQSSKKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSSAA 397 Query: 493 AREVKELVETTVSRVSAGSVQVRQAGTTMGEIVTQSADVQSLISGIARATDEQMRGIQEV 552 ARE+K L+E +VS+V +GS V AG TM E+V+ V +++ I+ A+ EQ GI++V Sbjct: 398 AREIKTLIEDSVSKVQSGSKLVAHAGATMDEVVSSIQRVDNIMGEISSASREQSIGIEQV 457 Query: 553 NRAVIQLDSMVQQNAALVEQSAAASATLQAQANTLASTIGRFRI 596 N+A+ Q+D + QQNAALVEQ+AA++ +LQ Q L + + F I Sbjct: 458 NQAIAQMDQVTQQNAALVEQAAASAESLQNQTTELNNVVSVFTI 501 >gi|134093834|ref|YP_001098909.1| putative methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 700 Score = 247 bits (631), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 159/348 (45%), Positives = 237/348 (68%), Gaps = 13/348 (3%) Query: 253 IVIAIDESEAMAGARSLLNTSLLSLILIVGIAS--VIGVAVT-ATAFRRLGQVSQAMAAI 309 +++A ES+A RS++ +L++ L + IA+ ++G V+ +T RRLG A + Sbjct: 313 LLLARMESDAFH--RSMI---MLAICLTMAIAAYFLLGFYVSFSTEVRRLG-----AAVM 362 Query: 310 GSGSGDLTQRLPDQGKDEVAVISRSFNQFVGQLQNVMLDIRDASEAVRMASNEIATANQD 369 + SGDL++++ GKDE+A + +F L ++ +R S+ + ASNEIAT N + Sbjct: 363 RTASGDLSRKITSGGKDEIAQLLNAFGNMSDGLTRLVTQVRLGSDTIAQASNEIATGNLN 422 Query: 370 LSTRTESAAASLEQTAASMAEISETVSRSTAAAKQADQRSSSATEIASQGGKVVSDAVTT 429 LSTRTE A+SLEQT+A+M E++ TV ++ A A+QA++ + +A+ IA QGG VS V T Sbjct: 423 LSTRTEEQASSLEQTSAAMEELTSTVKQNAAHAQQANRLAKTASGIAEQGGSAVSQVVDT 482 Query: 430 IGEIEKVSSQIGAIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAHEVRSLAKRS 489 + I++ S +I II V+D IAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LA+RS Sbjct: 483 MQAIQQSSREISDIIGVVDSIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRNLAQRS 542 Query: 490 AEAAREVKELVETTVSRVSAGSVQVRQAGTTMGEIVTQSADVQSLISGIARATDEQMRGI 549 A AA+E+K L+ +V +V AGS QV AG TM +IV V ++++ I A+ EQ GI Sbjct: 543 AVAAKEIKVLIAASVEKVEAGSKQVNAAGKTMDQIVQSITHVTTIMAEITAASAEQQSGI 602 Query: 550 QEVNRAVIQLDSMVQQNAALVEQSAAASATLQAQANTLASTIGRFRIS 597 + +N+A+ Q+D + QQNAALVE++AAA+ ++ Q L++T+ F+++ Sbjct: 603 EHINQALGQMDGITQQNAALVEEAAAAAESMHEQTLALSATVAVFKLA 650 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 243 bits (621), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 153/324 (47%), Positives = 223/324 (68%), Gaps = 4/324 (1%) Query: 277 LILIVGIA-SVIGVAVTATAFRR--LGQVSQAMAAIGS-GSGDLTQRLPDQGKDEVAVIS 332 +I +VG+ +IGVA+ A R G + + + + SGDLT + + ++E+ + Sbjct: 191 IIAVVGVLLGLIGVAIYAFFLIRAITGPLKEMLLHFDTIASGDLTSNIEVKSRNEMGTLM 250 Query: 333 RSFNQFVGQLQNVMLDIRDASEAVRMASNEIATANQDLSTRTESAAASLEQTAASMAEIS 392 + +L + + +R+ S A+ A+ EIA N DLS+RTE AASLE+TA+SM E++ Sbjct: 251 LGLQKMQKRLTDTVAQVREGSMAISTATTEIAAGNLDLSSRTEQQAASLEETASSMEELT 310 Query: 393 ETVSRSTAAAKQADQRSSSATEIASQGGKVVSDAVTTIGEIEKVSSQIGAIITVIDGIAF 452 TV ++T A+QA+Q ++SA+ +A +GG VVSD V T+ I + +I II VIDGIAF Sbjct: 311 STVKQNTDNARQANQLATSASAVAVKGGAVVSDVVNTMDAINTSARKIVDIIGVIDGIAF 370 Query: 453 QTNILALNAAVEAARAGEQGRGFAVVAHEVRSLAKRSAEAAREVKELVETTVSRVSAGSV 512 QTNILALNAAVEAARAGEQGRGFAVVA EVRSLA+RSA AA+E+K L++ +V++V AG+ Sbjct: 371 QTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKHLIDDSVNKVDAGTR 430 Query: 513 QVRQAGTTMGEIVTQSADVQSLISGIARATDEQMRGIQEVNRAVIQLDSMVQQNAALVEQ 572 V +AGTTM E+V V ++S I A+ EQ GI++VN A++Q+D + QQNAALVEQ Sbjct: 431 LVAEAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGIEQVNTAIVQMDEVTQQNAALVEQ 490 Query: 573 SAAASATLQAQANTLASTIGRFRI 596 +AAA+++L+ QA L++ + F++ Sbjct: 491 AAAAASSLRDQATNLSTVVSVFKL 514 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 235 bits (599), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 138/289 (47%), Positives = 193/289 (66%), Gaps = 5/289 (1%) Query: 278 ILIVGIASVIGVAVTATAFRRLGQVSQAMAAIGSGSGDLTQRLPDQGKDEVAVISRSFNQ 337 +L+ G + + + A Q+++++AA GDLTQ++ +E + ++ Sbjct: 199 VLLAGFMAFWLIRLIARPLHDAVQIARSVAA-----GDLTQQIHVNSTNETGQLLQALKD 253 Query: 338 FVGQLQNVMLDIRDASEAVRMASNEIATANQDLSTRTESAAASLEQTAASMAEISETVSR 397 L + +R +E + +AS EIA+ N DLS+RTE+ A SLE+TA+SM E++ TV + Sbjct: 254 MNDSLSKTVSAVRRGTETITVASGEIASGNADLSSRTEAQAGSLEETASSMEELTSTVRQ 313 Query: 398 STAAAKQADQRSSSATEIASQGGKVVSDAVTTIGEIEKVSSQIGAIITVIDGIAFQTNIL 457 + A+QA+Q SATE+A +GG VVS+ V T+G I+ S +I II VID IAFQTNIL Sbjct: 314 NADNARQANQLVVSATEVAVKGGSVVSEVVITMGSIKDSSRKIVDIIGVIDSIAFQTNIL 373 Query: 458 ALNAAVEAARAGEQGRGFAVVAHEVRSLAKRSAEAAREVKELVETTVSRVSAGSVQVRQA 517 ALNAAVEAARAGEQGRGFAVVA EVR+LA+RSA AA+E+K L++ +V +V AGS V QA Sbjct: 374 ALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAGAAKEIKALIDDSVHKVDAGSKLVDQA 433 Query: 518 GTTMGEIVTQSADVQSLISGIARATDEQMRGIQEVNRAVIQLDSMVQQN 566 G+TM EIVT V ++S I A+ EQ GI++VN+A+ Q+D M QQN Sbjct: 434 GSTMQEIVTSVKHVADIMSEITSASQEQSDGIEQVNQAISQMDEMTQQN 482 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 227 bits (578), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 156/343 (45%), Positives = 228/343 (66%), Gaps = 10/343 (2%) Query: 258 DES---EAMAGARSLLNTSLLSLILIVGIASVIGVAVTATAFRRLGQVSQAMAAIGSGSG 314 DES + ++G +L+ ++++++L IA + V +T L +V++++A G Sbjct: 178 DESITDDYLSGRMALIIGAVIAILLGTLIAWRLTVGITRPLHEAL-KVAESVA-----EG 231 Query: 315 DLTQRLP-DQGKDEVAVISRSFNQFVGQLQNVMLDIRDASEAVRMASNEIATANQDLSTR 373 DLT R + +DE ++ + + L + IR ++ + AS+EIA+ N DLS+R Sbjct: 232 DLTARSDMAETQDEPGLLLSALGRMQANLVRTVTQIRLGTDTIATASSEIASGNLDLSSR 291 Query: 374 TESAAASLEQTAASMAEISETVSRSTAAAKQADQRSSSATEIASQGGKVVSDAVTTIGEI 433 TE A+SLE+TA+SM E++ TV ++ ++QA+Q + +A+ +A +GG VVS V T+G I Sbjct: 292 TEQQASSLEETASSMEELTSTVKQNADNSRQANQLAVAASTVAVKGGAVVSQVVDTMGAI 351 Query: 434 EKVSSQIGAIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAHEVRSLAKRSAEAA 493 + +I II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LA+RSA AA Sbjct: 352 NNSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAA 411 Query: 494 REVKELVETTVSRVSAGSVQVRQAGTTMGEIVTQSADVQSLISGIARATDEQMRGIQEVN 553 +E+K L+ +V +V AGS V +AGTTM EIV V +++ I A+ EQ GI++VN Sbjct: 412 KEIKTLIGDSVEKVDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVN 471 Query: 554 RAVIQLDSMVQQNAALVEQSAAASATLQAQANTLASTIGRFRI 596 +AV Q+D + QQNAALVE++AAA+ +LQ QA LA + FR+ Sbjct: 472 QAVSQMDQVTQQNAALVEEAAAAAESLQDQARNLAEAVSVFRV 514 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.315 0.126 0.335 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 824,805 Number of extensions: 29662 Number of successful extensions: 200 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 170 Number of HSP's successfully gapped: 14 Length of query: 597 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 510 Effective length of database: 713,682 Effective search space: 363977820 Effective search space used: 363977820 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)