BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3494.p
         (343 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093678|ref|YP_001098753.1| putative integrase/recombinase ...    90   2e-19

>gi|134093678|ref|YP_001098753.1| putative integrase/recombinase
           [Herminiimonas arsenicoxydans]
          Length = 333

 Score = 89.7 bits (221), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 145/336 (43%), Gaps = 32/336 (9%)

Query: 10  RWRARIRRKGFPAQSEMFDTKAQAQDWASRQEADMRALKFQDVRIIADKTLGSAIDRYVE 69
           +++A +R+KG+P +++ F+T+  A+DWA+  E++M    F D       T G  + RY  
Sbjct: 11  QFQATVRKKGYPRKTQTFETRKAAKDWANLVESEMNHGTFIDRSQAEKTTFGDILQRY-- 68

Query: 70  EQTQVKP----LGKNKKAVLATLKRYLGKLTMPELTGDALIDYVKERKGAGAGGVTIAID 125
            + QV P       +   +   LK  L K T+  L       Y  ER    + G T+  +
Sbjct: 69  -KDQVVPDRRGYQMDNYRIAKLLKHDLAKRTLSTLRNVDFSKYRDERLQEVSRG-TVLRE 126

Query: 126 LTYLSSVLRAARNIWRWPVNLDAIAQARAYMDHIGLSTRSKERTRRPTKIELGNISTWFV 185
           L  +S V   A+  W   V+ + IA  R          + K R RR      G+     +
Sbjct: 127 LLLISHVFSTAKKDWSIAVD-NPIASIRK-------PKQGKSRDRRLQ----GDEEKRLL 174

Query: 186 VKARQKVPMSDLIAFAV----DTAMRLSEIINLKWADLNEEDRTIIIRNRKHPRAKIGND 241
             AR     S  + F +    +T MR  EI+ L    ++ ++  I +      + K G D
Sbjct: 175 AAARDSFCRSPTLDFCIQLGLETGMRAGEIVQLTSDQIDLQNHVIRL-----GKTKNGED 229

Query: 242 QEVPLLGDAFAIIKRQ-PKMDKEERIFPVTEGTVSSLFPRACKSLGIEDLRFHDLRHEGV 300
           + VPL   A  II+   P  +     F  + G +S  F RAC    I+   FHDLRHE  
Sbjct: 230 RVVPLTTTAEDIIRSMLPSENGRLTSFHDSNG-LSKAFRRACARAEIKGFCFHDLRHEAA 288

Query: 301 SRLFEQGYSIEQVALVSGHRDWKMLARYTQIRAKDL 336
           SR F     +  +A + G +  +M  RY   R  +L
Sbjct: 289 SR-FAPTMPVATLAKIMGWKTLQMAMRYYNPRDDEL 323


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 619,559
Number of extensions: 24048
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 261
Effective length of database: 730,157
Effective search space: 190570977
Effective search space used: 190570977
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)