BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3491.p
         (161 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094269|ref|YP_001099344.1| 6,7-dimethyl-8-ribityllumazine ...   271   8e-75
gi|134095279|ref|YP_001100354.1| riboflavin synthase subunit bet...    56   1e-09

>gi|134094269|ref|YP_001099344.1| 6,7-dimethyl-8-ribityllumazine
           synthase [Herminiimonas arsenicoxydans]
          Length = 166

 Score =  271 bits (694), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 133/152 (87%), Positives = 143/152 (94%)

Query: 1   MTIGTYDPDLNGESLRIGIVQARFNEDVCHGLLAACLAELKHLGVADEDILHVTVPGALE 60
           MT+GTY+ +L GE LRIGIVQARFN+DVCHGLL+ACLAELKHLGV DEDILHVTVPGALE
Sbjct: 1   MTVGTYEMNLAGEGLRIGIVQARFNQDVCHGLLSACLAELKHLGVVDEDILHVTVPGALE 60

Query: 61  IPLALQKMAETEQFDALIALGAVIRGETYHFELVSNESGAGITRIGLDFGLPIANAVLTT 120
           IPLAL+KMAET QFDALIA+GAVIRGETYHFELVSNESGAGITR+GLDFGLPIANAVLTT
Sbjct: 61  IPLALRKMAETLQFDALIAIGAVIRGETYHFELVSNESGAGITRVGLDFGLPIANAVLTT 120

Query: 121 ENDEQAEVRMAEKGADAARVAVEMANLSIVLE 152
           + DEQAEVRM EKG DAARVAVEMANL+I LE
Sbjct: 121 DTDEQAEVRMEEKGTDAARVAVEMANLTIALE 152


>gi|134095279|ref|YP_001100354.1| riboflavin synthase subunit beta
           [Herminiimonas arsenicoxydans]
          Length = 167

 Score = 55.8 bits (133), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 61/116 (52%)

Query: 7   DPDLNGESLRIGIVQARFNEDVCHGLLAACLAELKHLGVADEDILHVTVPGALEIPLALQ 66
           D      + RI  +QA +++++      A + E+   G + + I    V GA EIPL  +
Sbjct: 6   DIKAKSAARRIAFIQASWHKEIVDQCRIAFVEEMAARGYSADVIDFFEVAGAFEIPLHAK 65

Query: 67  KMAETEQFDALIALGAVIRGETYHFELVSNESGAGITRIGLDFGLPIANAVLTTEN 122
            +A++ ++ A++  G V+ G  Y  E VS    +G+ ++ L+  +P+ +AVLT  +
Sbjct: 66  VLAKSGRYAAIVGTGLVVDGGVYRHEFVSQAVISGLMQVQLETEVPVISAVLTPHH 121


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.134    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 296,049
Number of extensions: 11637
Number of successful extensions: 38
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 2
Length of query: 161
Length of database: 1,000,347
Length adjustment: 75
Effective length of query: 86
Effective length of database: 753,222
Effective search space: 64777092
Effective search space used: 64777092
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)