BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3488.p
         (335 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094272|ref|YP_001099347.1| putative transmembrane protein ...   265   3e-72

>gi|134094272|ref|YP_001099347.1| putative transmembrane protein
           [Herminiimonas arsenicoxydans]
          Length = 312

 Score =  265 bits (676), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 148/300 (49%), Positives = 190/300 (63%), Gaps = 32/300 (10%)

Query: 1   MSNQASEAPLSGAPQMVRRVNFRNLSGNPRIAQFFGIAHRLLTMAGIAALFVLGLMFFNP 60
           M N+ + A    A Q  R+    ++S      +    A + +   G+ A+  L LMFF P
Sbjct: 1   MLNRITTAMRQVANQSARQAIATSISMRDSTNRLVATARQAMMALGLTAIATLALMFFKP 60

Query: 61  DLADRLISMSPFSDA-----PEEVQEADAPATPALADLMAPTTPVASVNALAGAAVAGSV 115
           ++ADR+ ++SPFS+A     P+E+        P +A+LM                     
Sbjct: 61  EIADRIQALSPFSEAVASTVPQEM--------PEMANLM-------------------EE 93

Query: 116 QSAVATQPQHQTQALTPEERQLLGNPRQQKLVTNWLAKRYRVASDAADMLVSAAYLTARD 175
            +A A +P+   +  T     ++G   QQ+ VT W++KRYRVA+DA +MLVSAAYLT ++
Sbjct: 94  AAADAAEPEAALKTATTGNNAMMGTDLQQQRVTQWISKRYRVANDATNMLVSAAYLTGKE 153

Query: 176 IKLDPLLILSVIAIESRFNPFAESPMGAQGLMQVMAKVHHDKFQELGGIKAALNPVANIR 235
           I  DPLLIL+V+AIESRFNPFAESP+GAQGLMQVM+KVHHDKF ++GG KAALNPVANI+
Sbjct: 154 INFDPLLILAVMAIESRFNPFAESPVGAQGLMQVMSKVHHDKFADMGGTKAALNPVANIK 213

Query: 236 VGSQILKEYVTRGGSVEAGLKSYVGAADMSNDGGYGIKVLSEYQNLKQVAMGKNVSIYTT 295
           VGS ILKEYV R GSVE GLK YVGAA MS+D GYG KVL EY  LK VA GK VS + T
Sbjct: 214 VGSLILKEYVARDGSVEGGLKRYVGAAAMSSDAGYGAKVLGEYDRLKAVASGKRVSAFAT 273


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.128    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 540,553
Number of extensions: 19794
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 253
Effective length of database: 730,157
Effective search space: 184729721
Effective search space used: 184729721
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)