BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3487.p
         (494 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094273|ref|YP_001099348.1| 3-octaprenyl-4-hydroxybenzoate ...   862   0.0  

>gi|134094273|ref|YP_001099348.1| 3-octaprenyl-4-hydroxybenzoate
           decarboxylase [Herminiimonas arsenicoxydans]
          Length = 479

 Score =  862 bits (2227), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/478 (86%), Positives = 438/478 (91%)

Query: 17  GELKRVSHPVSSRLEMTEIADRTLRAEGPALLFEQVDQKNIPVLANLFGTPHRVALGMGA 76
           GELKR++ PVS  LEMTEI DRTLRAEGPALLFE      IPVL NLFGTP RVALGMGA
Sbjct: 2   GELKRINMPVSPYLEMTEICDRTLRAEGPALLFENPTGHTIPVLGNLFGTPQRVALGMGA 61

Query: 77  QSISELRRIGHLLARLKEPEPPKGIKDVLDLGGLVKSLWDMAPKERSSAPCQDVVWEGQD 136
             +SELR+IGH+LA LKEPEPPKG KD+L LG LVKSLWDM PKER  APC D+VWEG D
Sbjct: 62  TDVSELRKIGHVLAMLKEPEPPKGFKDMLGLGSLVKSLWDMTPKERRDAPCHDIVWEGND 121

Query: 137 VDLSRLPIQHCWPGDIAPLITWGLVITKGPHKKRQNLGIYRQQVLGPNKVIMRWLAHRGG 196
           VDL+RLPIQHCWPGDIAPLITWGLVITKGPHKKRQNLGIYRQQV+G NKVIMRWLA RGG
Sbjct: 122 VDLARLPIQHCWPGDIAPLITWGLVITKGPHKKRQNLGIYRQQVIGRNKVIMRWLAQRGG 181

Query: 197 ALDFREHCIAHPGQPYPVVVALGADPATILGAVTPVPDSLSEYQFAGLLRGSRTELVKAM 256
           ALDFREH IA+ GQPYP+ VALGADPATILGAVTPVPDSLSEYQFAGLLRGSRTELVKA+
Sbjct: 182 ALDFREHSIANRGQPYPIAVALGADPATILGAVTPVPDSLSEYQFAGLLRGSRTELVKAI 241

Query: 257 GSDLRVPASAEIVLEGHIYPDEHHASGFEHALEGPYGDHTGYYNEQDWFPVFTIDRITMR 316
           GS+LRVPASAEIVLEGHIYPDE H SG+EHALEGPYGDHTGYYNEQD FPVFTIDRITMR
Sbjct: 242 GSELRVPASAEIVLEGHIYPDESHPSGYEHALEGPYGDHTGYYNEQDTFPVFTIDRITMR 301

Query: 317 RDAIYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQFAEITDFYLPPEGCSYRMAVVQMKK 376
           RD IYHSTYTGKPPDEPA+LGVALNEVF+PLLQKQF+EI DFYLPPEGCSYRMAVVQMKK
Sbjct: 302 RDPIYHSTYTGKPPDEPAILGVALNEVFIPLLQKQFSEILDFYLPPEGCSYRMAVVQMKK 361

Query: 377 SYAGHAKRVMFGVWSFLRQFMYTKFIVVVDEDVDIRDWKEVIWAITTRVDPVRDTVLVDN 436
           +Y GHAKRVMFGVWSFLRQFMYTKFI+VVDEDV+IRDWKEVIWAITTRVDP RDT LVDN
Sbjct: 362 AYPGHAKRVMFGVWSFLRQFMYTKFIIVVDEDVNIRDWKEVIWAITTRVDPTRDTTLVDN 421

Query: 437 TPIDYLDFASPISGLGSKMGIDATNKWPGETNREWGTPIVMSDEVKKRVDTIWKDLGI 494
           TPIDYLDFASP+SGLGSKMGIDATNKWPGET+REWGT I M+ EVKKRVD IW++LGI
Sbjct: 422 TPIDYLDFASPVSGLGSKMGIDATNKWPGETDREWGTTITMTPEVKKRVDQIWQELGI 479


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.139    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,010,101
Number of extensions: 44448
Number of successful extensions: 109
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 409
Effective length of database: 720,272
Effective search space: 294591248
Effective search space used: 294591248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)