BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3484.p
         (227 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094091|ref|YP_001099166.1| putative fumarylacetoacetate hy...   282   1e-77
gi|134094428|ref|YP_001099503.1| putative 5-carboxymethyl-2-hydr...   280   5e-77
gi|134093623|ref|YP_001098698.1| putative 5-oxopent-3-ene-1,2,5-...    74   7e-15

>gi|134094091|ref|YP_001099166.1| putative fumarylacetoacetate
           hydrolase family protein [Herminiimonas arsenicoxydans]
          Length = 229

 Score =  282 bits (722), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 130/206 (63%), Positives = 161/206 (78%), Gaps = 1/206 (0%)

Query: 21  FPVRRIYCVGRNYAAHAREMGYDPDREPPFFFMKPADAIVPTDSVVPYPVATADYHHEIE 80
           FPV RIYC+GRNYAAH  EMG+DPD+EPPFFF K  D I+  D   PYP  T+D H E E
Sbjct: 24  FPVHRIYCIGRNYAAHTIEMGHDPDKEPPFFFQKNPDNII-VDKDFPYPPETSDVHFEFE 82

Query: 81  MVVALAKGGRDIPVEQALELVYGYAVGLDMTRRDLQAQAKKMGRPWDMGKGFDHSAPCAP 140
           +VVALAKGG++I VE+AL+ ++GY VGLDMTRRDLQ  AKKMGRPW++GK F+HSAPC+ 
Sbjct: 83  LVVALAKGGKNITVEKALDHIFGYGVGLDMTRRDLQGVAKKMGRPWEVGKAFEHSAPCSA 142

Query: 141 IVPVAQAGHPDQGAVWLKVNGEVRQQGDLADLIWNVAETISYLSSLVELFPGDLIFTGTP 200
           ++PVA  GHP +G +W KVNGEVRQ+GDL  +IW VAE IS LS+  EL PGDLI TGTP
Sbjct: 143 LIPVADVGHPHKGGIWFKVNGEVRQKGDLDQMIWKVAEQISILSTFFELKPGDLIMTGTP 202

Query: 201 EGVGAVVKGDQLQGHVDGLPDINITI 226
            GVGA+ KGDQL+G ++G+  + + +
Sbjct: 203 AGVGAINKGDQLEGMIEGVCGMKLAV 228


>gi|134094428|ref|YP_001099503.1| putative
           5-carboxymethyl-2-hydroxymuconate delta-isomerase
           [Herminiimonas arsenicoxydans]
          Length = 264

 Score =  280 bits (716), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 134/223 (60%), Positives = 171/223 (76%), Gaps = 5/223 (2%)

Query: 9   AQTTIPVVGGLP-FPVRRIYCVGRNYAAHAREMGYDPDREPPFFFMKPADAI---VPTDS 64
           AQ +IP+VG    FPVRRIYC+GRNYAAHAREMG DP REPPFFF KP+D+I    P  +
Sbjct: 41  AQPSIPIVGSNERFPVRRIYCIGRNYAAHAREMGSDPTREPPFFFQKPSDSIQYIAPGKT 100

Query: 65  V-VPYPVATADYHHEIEMVVALAKGGRDIPVEQALELVYGYAVGLDMTRRDLQAQAKKMG 123
           V  PYP  T +YH+EIE+V A++KGG++IPVE AL+ V+GYAVGLDMTRRDLQA  KK  
Sbjct: 101 VDHPYPTLTKNYHYEIELVAAISKGGKNIPVETALQHVFGYAVGLDMTRRDLQAAMKKEE 160

Query: 124 RPWDMGKGFDHSAPCAPIVPVAQAGHPDQGAVWLKVNGEVRQQGDLADLIWNVAETISYL 183
           +PW++GK FD SAP  P+ PVA  G+  QG +WLKVNG+V+Q  DL  +IW+VAE IS L
Sbjct: 161 KPWEIGKSFDMSAPIGPLHPVASIGNFTQGKIWLKVNGQVKQSSDLNKMIWSVAEQISNL 220

Query: 184 SSLVELFPGDLIFTGTPEGVGAVVKGDQLQGHVDGLPDINITI 226
           S   EL PGD+I++GTPE VG VV+GD ++G+++ LP I++ +
Sbjct: 221 SKAFELQPGDIIYSGTPENVGPVVRGDVMEGYIERLPSISLKV 263


>gi|134093623|ref|YP_001098698.1| putative
           5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase
           [Herminiimonas arsenicoxydans]
          Length = 255

 Score = 73.9 bits (180), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 101/220 (45%), Gaps = 7/220 (3%)

Query: 3   FAIPVPAQTTIPVVGG---LPFPVRRIYCVGRNYAAHAREMGYDPDREPPFFFMKPADAI 59
           FA PV   T + +      +P    +I  +  N+   A+++      EP +    P   +
Sbjct: 32  FANPVKTDTVLNINDVKVLMPAQPTKIIAMWNNFHELAKKLNLADPVEPLYLIKAPNSYL 91

Query: 60  VPTDSVVPYPVATADYHHEIEMVVALAKGGRDIPVEQALELVYGYAVGLDMTRRDLQAQA 119
            P +++   P        E E+ + + K  + +    A++ V+GY V  D+T   +  + 
Sbjct: 92  NPGETI-QKPPTDDKVVFEGELGIVIGKTAKAVSEADAMDYVFGYTVANDVTVATILNRD 150

Query: 120 KKMGRPWDMGKGFDHSAPCAPIVPVAQAGHPDQGAVWLKVNGEVRQQGDLADLIWNVAET 179
           +   + W   KG D   P  P +  A    P    V   +NG+VRQ   ++D+ ++  + 
Sbjct: 151 ESFAQ-WVRAKGLDTFCPFGPTI--ATDLDPTTLVVKTVLNGDVRQNYPISDMRFSTQQL 207

Query: 180 ISYLSSLVELFPGDLIFTGTPEGVGAVVKGDQLQGHVDGL 219
           +S +S+ + LFPGD+I  GT  GVG++  G  ++  + G+
Sbjct: 208 VSMISADMTLFPGDIILCGTSVGVGSMKPGSVVEVEIAGI 247


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.140    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 517,852
Number of extensions: 23663
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 3
Length of query: 227
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 148
Effective length of database: 740,042
Effective search space: 109526216
Effective search space used: 109526216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)