BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3483.p (487 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093720|ref|YP_001098795.1| ATP-dependent RNA helicase [Her... 726 0.0 gi|134095351|ref|YP_001100426.1| ATP-dependent RNA helicase [Her... 436 e-123 gi|134096391|ref|YP_001101466.1| putative cold-shock DeaD box AT... 304 6e-84 gi|134095506|ref|YP_001100581.1| ATP-dependent RNA helicase [Her... 303 9e-84 gi|134094897|ref|YP_001099972.1| ATP-dependent RNA helicase DbpA... 270 1e-73 >gi|134093720|ref|YP_001098795.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans] Length = 502 Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/489 (76%), Positives = 403/489 (82%), Gaps = 20/489 (4%) Query: 13 APAVRFEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSL 72 APA+RF+DFGL+P+ILKAL +QGYVHPTPIQA+AIPVVL+G DVMGAAQTGTGKTAGFSL Sbjct: 20 APAIRFQDFGLAPEILKALNDQGYVHPTPIQAEAIPVVLKGMDVMGAAQTGTGKTAGFSL 79 Query: 73 PIIQRLLAHASHSASPARHPVRALILTPTRELADQVADNVAAYCRFTPLRSTVVFGGVDM 132 PIIQ L+AHA+ SASPARHPVRALILTPTRELADQVA NV AY R TPLRS VVFGG+DM Sbjct: 80 PIIQLLMAHANSSASPARHPVRALILTPTRELADQVAANVKAYSRHTPLRSLVVFGGMDM 139 Query: 133 APQTAILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIIN 192 PQTA LR GVEIVIATPGRLLDHVQQKT+NLSQTQILVMDEADRMLDMGFLPDLQRIIN Sbjct: 140 TPQTAALRGGVEIVIATPGRLLDHVQQKTINLSQTQILVMDEADRMLDMGFLPDLQRIIN 199 Query: 193 LLPKQRQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVTQTIYKVEEAAKADA 252 LLPKQRQNL+FSATFSPEIKKLAA+F +PVTIEVARSNATAENVTQ IYKVEE AK DA Sbjct: 200 LLPKQRQNLMFSATFSPEIKKLAATFLKDPVTIEVARSNATAENVTQIIYKVEEEAKRDA 259 Query: 253 VSFIIRQRELKQVIVFSNTKIGASRLARTLLAEGVKASAIHGDKTQSERMAALEAFKQGQ 312 VSFIIR+R LKQVIVFSNTKIGASRLAR L +EGVKASAIHGDK+QSERM ALE FK G Sbjct: 260 VSFIIRERGLKQVIVFSNTKIGASRLARQLESEGVKASAIHGDKSQSERMQALEQFKNGT 319 Query: 313 IEVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFCDKDER 372 IEVLVATDVAARGLDIAELPCVIN+DLPYNAEDYVHRIGRTGRAGASGDAISLF DKD R Sbjct: 320 IEVLVATDVAARGLDIAELPCVINFDLPYNAEDYVHRIGRTGRAGASGDAISLFSDKDAR 379 Query: 373 LLVDIEKLIKKKFERAELSGFAP-----------RARHERSERSERSERGERSERGERGE 421 LLVDIEK+IK KF AEL GF P R HERS R + E + R R Sbjct: 380 LLVDIEKMIKHKFVPAELIGFTPSSGRTAERSHDRRAHERSPRKD-----ESAPRPSRAP 434 Query: 422 RSDRGERSRSSREGGAPAARREKIDPWFLKPYEPSTTETVSTKPELAKNNRPKP---KVA 478 G S SR A A R+EKIDP+F +PYEP+ + VS +LA KP K+A Sbjct: 435 ERSPGAASNGSRSAYAAAPRKEKIDPFFTRPYEPAPSTMVSDN-KLADQVPAKPQKHKMA 493 Query: 479 ALLGGMPKR 487 ALLGG PKR Sbjct: 494 ALLGGAPKR 502 >gi|134095351|ref|YP_001100426.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans] Length = 449 Score = 436 bits (1121), Expect = e-123, Method: Compositional matrix adjust. Identities = 212/379 (55%), Positives = 278/379 (73%), Gaps = 1/379 (0%) Query: 18 FEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77 F D GL+ I++A+ E GY PTPIQAQAIP VL G D++ AQTGTGKTAGF+LPI+ R Sbjct: 3 FTDLGLADGIVRAVTEHGYSIPTPIQAQAIPAVLAGGDLLAGAQTGTGKTAGFTLPILHR 62 Query: 78 LLAHAS-HSASPARHPVRALILTPTRELADQVADNVAAYCRFTPLRSTVVFGGVDMAPQT 136 L + H+++ A+ P+RAL+LTPTRELA QV ++V Y ++ L S V+FGGV + PQ Sbjct: 63 LATSGTPHASASAQRPIRALVLTPTRELAAQVEESVRTYSKYLNLNSAVIFGGVGINPQI 122 Query: 137 AILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPK 196 +L+ GV+I++ATPGRLLDH+QQ TVNLS+ +ILV+DEADRMLDMGF+ D++R++ +LPK Sbjct: 123 KLLKHGVDILVATPGRLLDHMQQGTVNLSKVEILVLDEADRMLDMGFIKDIRRVLAVLPK 182 Query: 197 QRQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVTQTIYKVEEAAKADAVSFI 256 RQNLLFSATFS EIK LA N+P IEVAR N+T E + Q I+ V+ K ++ + Sbjct: 183 NRQNLLFSATFSNEIKALADGLLNSPAMIEVARRNSTVEVIEQKIHPVDRDKKHPMLAHL 242 Query: 257 IRQRELKQVIVFSNTKIGASRLARTLLAEGVKASAIHGDKTQSERMAALEAFKQGQIEVL 316 I+ QV+VF+ TK GA++L L +G+ AIHG+K+QS R AL FK G ++VL Sbjct: 243 IKTNNWSQVLVFTRTKHGANKLVEQLEKDGISGMAIHGNKSQSARTRALSEFKDGSLQVL 302 Query: 317 VATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFCDKDERLLVD 376 VATD+AARG+DI +LP V+NYDLP EDYVHRIGRTGRAGA+G+A+SL C + +L D Sbjct: 303 VATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELDMLKD 362 Query: 377 IEKLIKKKFERAELSGFAP 395 IEKLIK+K + GF P Sbjct: 363 IEKLIKRKLPSEVIVGFEP 381 >gi|134096391|ref|YP_001101466.1| putative cold-shock DeaD box ATP-dependent RNA helicase (partial match) [Herminiimonas arsenicoxydans] Length = 826 Score = 304 bits (779), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 158/367 (43%), Positives = 229/367 (62%), Gaps = 9/367 (2%) Query: 18 FEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77 F D LS +L+ L E GY P+PIQA IP++L DV+G AQTGTGKTA F+LPI+ R Sbjct: 9 FSDLNLSEPLLRVLKELGYEAPSPIQAATIPLLLNNSDVLGQAQTGTGKTAAFALPILSR 68 Query: 78 LLAHASHSASPARHPVRALILTPTRELADQVADNVAAYCRFTP-LRSTVVFGGVDMAPQT 136 + + +P +AL+L PTRELA QVA+ Y P ++GG Q Sbjct: 69 IDIKQT---TP-----QALVLAPTRELAIQVAEAFQRYASHIPGFHVLPIYGGQSYGAQL 120 Query: 137 AILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPK 196 + LR GV +V+ TPGR++DH+++ +++LS+ + +V+DEAD ML MGF+ D++ I+ P+ Sbjct: 121 SALRRGVHVVVGTPGRVIDHLEKGSLDLSKLKTMVLDEADEMLRMGFIDDVETILQKTPE 180 Query: 197 QRQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVTQTIYKVEEAAKADAVSFI 256 RQ LFSAT IK++A ++ +P I VA TA+N+ Q + V K +A++ I Sbjct: 181 ARQTALFSATMPSAIKRIATTYLRDPELITVAAKTGTADNIRQRYWLVSGMQKLEALTRI 240 Query: 257 IRQRELKQVIVFSNTKIGASRLARTLLAEGVKASAIHGDKTQSERMAALEAFKQGQIEVL 316 + +I+F+ TK+G LA L A G A+AI+GD Q +R ++ K G+I++L Sbjct: 241 LEAETFDGMIIFARTKLGTEELAGKLQARGFSAAAINGDIQQQQRERTIQQLKDGKIDIL 300 Query: 317 VATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFCDKDERLLVD 376 VATDVAARGLD+ + VINYD+P++ E Y HRIGRTGRAG SG+AI ++ LL Sbjct: 301 VATDVAARGLDVERISHVINYDVPHDPESYTHRIGRTGRAGRSGEAILFIAPRERNLLKA 360 Query: 377 IEKLIKK 383 IE+ ++ Sbjct: 361 IERATRQ 367 >gi|134095506|ref|YP_001100581.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans] Length = 468 Score = 303 bits (777), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 171/433 (39%), Positives = 248/433 (57%), Gaps = 32/433 (7%) Query: 18 FEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77 FE GL I+KAL E GY PT +QAQAIP ++GRD+M ++QTG+GKTA F LP + + Sbjct: 3 FESLGLHASIIKALTESGYTAPTGVQAQAIPAAIEGRDMMVSSQTGSGKTAAFMLPALHK 62 Query: 78 LLAHA-----------SHSASPAR-----------HPVRALILTPTRELADQVADNVAAY 115 + + A AR P + L+LTPTRELA QV + Y Sbjct: 63 FAVQSEQQQPEGGRTPNQEAQSARSRGDRPRFKAAQP-KMLVLTPTRELALQVTTSTDKY 121 Query: 116 CRFTP-LRSTVVFGGVDMAPQTAILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDE 174 F +++ + GG+ Q +L EI++ATPGRL+DH++ ++ S+ QILV+DE Sbjct: 122 GAFMKRVKAVSILGGMPYPKQMQLLAKNPEILVATPGRLIDHMESGKIDFSELQILVLDE 181 Query: 175 ADRMLDMGFLPDLQRIINLLPKQRQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATA 234 ADRMLDMGF+ D+++I+ P+ RQ +LFSAT + +A +P+ I++A S Sbjct: 182 ADRMLDMGFIDDIEKIVAATPEGRQTMLFSATLDGTVGTMAKRITKDPLVIQIAGSATKH 241 Query: 235 ENVTQTIYKVEE-AAKADAVSFIIRQRELKQVIVFSNTKIGASRLARTLLAEGVKASAIH 293 EN+ Q ++ V++ + K + ++R + Q +VF+ TK A +A L G A+A+H Sbjct: 242 ENIKQGVHFVDDLSHKNRLLDHLLRDETMDQAVVFTATKRDADTIADRLNIAGFAAAALH 301 Query: 294 GDKTQSERMAALEAFKQGQIEVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRT 353 GD Q R L+ ++GQI VLVATDVAARG+D+ + V NYDLP EDYVHRIGRT Sbjct: 302 GDMHQGARNRTLDGLRRGQIRVLVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 361 Query: 354 GRAGASGDAISLFCDKDERLLVDIEKLIKKKFERAELSGF-------APRARHERSERSE 406 GRAG +G A+SL + + IE+ IK+ + + GF APR+ H+ Sbjct: 362 GRAGRNGIAVSLVNHAEGMNVKRIERFIKQLIPVSVIEGFEPKRTASAPRSNHKPGGWKP 421 Query: 407 RSERGERSERGER 419 RG ++ G+R Sbjct: 422 GDNRGNAAKPGQR 434 >gi|134094897|ref|YP_001099972.1| ATP-dependent RNA helicase DbpA [Herminiimonas arsenicoxydans] Length = 506 Score = 270 bits (691), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 155/389 (39%), Positives = 226/389 (58%), Gaps = 10/389 (2%) Query: 8 SAAPAAPAVRFEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKT 67 + AP F LSP +L L GY T IQAQ++PV+LQ RD++ A+TG+GKT Sbjct: 38 TQAPNMNPSSFAALALSPPMLSNLDALGYREMTSIQAQSLPVILQLRDLIAQAKTGSGKT 97 Query: 68 AGFSLPIIQRLLAHASHSASPARHPVRALILTPTRELADQVADNVAAYCRFTP-LRSTVV 126 A F + ++Q+L +P ++ L++ PTRELADQV++ + RF ++ + Sbjct: 98 AAFGIGMLQKL--------NPTWFAIQGLVICPTRELADQVSNELRRLARFADNIKILTL 149 Query: 127 FGGVDMAPQTAILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPD 186 GG M PQ A L G IV+ TPGRL DH+ + T+NLS Q LV+DEADRM+DMGF + Sbjct: 150 CGGAPMRPQIASLEHGAHIVVGTPGRLRDHISRNTINLSTVQTLVLDEADRMVDMGFYEE 209 Query: 187 LQRIINLLPKQRQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVTQTIYKVEE 246 + I++ P++RQ LLFSAT+ +I+K +A F +PV ++V + ++ + Q Y+V Sbjct: 210 IAGIVSACPERRQTLLFSATYPDDIRKASAEFLRDPVEVKVEAQHDDSQ-IEQRFYEVGY 268 Query: 247 AAKADAVSFIIRQRELKQVIVFSNTKIGASRLARTLLAEGVKASAIHGDKTQSERMAALE 306 + AV+ +++ + F NTKI LA L A+G A A++G+ Q ER L Sbjct: 269 DDRNAAVATLLKHYRPVSTLAFCNTKIHCRELAAELRAQGFSALALYGELEQRERDEILV 328 Query: 307 AFKQGQIEVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLF 366 F VLVATDVAARGLDI L VIN D+ + E ++HRIGRTGR G A+SL Sbjct: 329 LFANQSCSVLVATDVAARGLDIQSLGAVINVDVSKDTEVHIHRIGRTGRGQDKGLALSLC 388 Query: 367 CDKDERLLVDIEKLIKKKFERAELSGFAP 395 +++ + IE+ +K + +L P Sbjct: 389 APNEKKWVKLIEEYQQKPAQWFDLKSAEP 417 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.317 0.131 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 698,582 Number of extensions: 24364 Number of successful extensions: 109 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 98 Number of HSP's successfully gapped: 6 Length of query: 487 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 402 Effective length of database: 720,272 Effective search space: 289549344 Effective search space used: 289549344 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)