BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3482.p
         (294 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093721|ref|YP_001098796.1| putative glutamyl-Q tRNA(Asp) s...   407   e-115
gi|134094216|ref|YP_001099291.1| glutamyl-tRNA synthetase [Hermi...   125   2e-30

>gi|134093721|ref|YP_001098796.1| putative glutamyl-Q tRNA(Asp)
           synthetase [Herminiimonas arsenicoxydans]
          Length = 319

 Score =  407 bits (1047), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 199/289 (68%), Positives = 223/289 (77%)

Query: 6   YVGRFAPSPSGPLHAGSLVAALASYLDARVHQGRWLLRIEDIDETRTVPGVADDIIATLA 65
           Y GRFAPSPSGPLHAGSLVAA+ASYLDA+ H+G WLLRIEDIDETRTVPG    I+  LA
Sbjct: 31  YTGRFAPSPSGPLHAGSLVAAMASYLDAKAHRGLWLLRIEDIDETRTVPGAIAAIMQALA 90

Query: 66  ALDMHSDGPVLVQSQRKARYELARQRLGALAYPCGCSRKEIADSRVGTASDGAAIYPGTC 125
              M  DG VLVQSQRK  Y+ A  RL    YPCGC+RKEI+DSR+G A DGAAIYPGTC
Sbjct: 91  IFGMQHDGEVLVQSQRKDVYQAAFDRLAGHVYPCGCTRKEISDSRLGIAPDGAAIYPGTC 150

Query: 126 RPGLAPGKPARTLRLRVPDAGQPGELVQFQDRWLGPQAQHLASEVGDFVLQRADGFWAYQ 185
           R GL  GK +RTLR+RVPD GQ  E + F DRWLGPQ QHLA+EVGDFVL+RADG+WAYQ
Sbjct: 151 RDGLNAGKVSRTLRVRVPDIGQEDESITFNDRWLGPQTQHLATEVGDFVLKRADGYWAYQ 210

Query: 186 LAVVVDDAEQGVTDIVRGADLLDSTARQIYLQRLLGYPTPRYLHVPLLMNTTGEKFSKQN 245
           LAVVVDDAEQGVT IVRG DLL+STARQIYLQ +LG  TP Y+HVP+++N  GEK SKQ 
Sbjct: 211 LAVVVDDAEQGVTHIVRGTDLLESTARQIYLQHMLGLATPSYMHVPVVLNEVGEKLSKQT 270

Query: 246 GAQALDLGQPLQALQQAAAFLGLETGAARDREGFWRLALTGWQARFGPQ 294
           GAQALDL  PL  L  AA FL L++G A   E FW+ A+  W  RFG Q
Sbjct: 271 GAQALDLAHPLNELLHAARFLELQSGRANSIESFWQGAIAEWAHRFGAQ 319


>gi|134094216|ref|YP_001099291.1| glutamyl-tRNA synthetase
           [Herminiimonas arsenicoxydans]
          Length = 467

 Score =  125 bits (315), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/293 (35%), Positives = 139/293 (47%), Gaps = 23/293 (7%)

Query: 9   RFAPSPSGPLHAGSLVAALASYLDARVHQGRWLLRIEDIDETRTVPGVADDIIATLAALD 68
           RFAPSP+G LH G    AL S+  AR   G ++LRIED D  R+ P     II  +  L 
Sbjct: 10  RFAPSPTGYLHVGGARTALFSWAYARHFGGTFVLRIEDTDLERSTPEAVQAIIEGMEWLG 69

Query: 69  MHSDGPVLVQSQRKARY-ELARQRLGA-LAYPCGCSRKEIADSRVGTASDGAAI-YPGTC 125
           +H D     Q QR  RY E+  Q L A  AY C  S +E+   R    + G    Y GT 
Sbjct: 70  LHHDEGPFYQMQRMDRYREVIAQMLAAGTAYYCYSSSEEVEAMRERQRAAGEKPRYDGTW 129

Query: 126 RP---GLAPGKPAR---TLRLRVPDAGQPGELVQFQDRWLGPQAQHLASEVGDFVLQRAD 179
           RP      P  PA     +R R P  G     V + D   G Q      E+ D V+ R D
Sbjct: 130 RPEAGKTLPAIPADRKPVVRFRNPMEGD----VTWLDVVKG-QITISNRELDDLVIARQD 184

Query: 180 GFWAYQLAVVVDDAEQGVTDIVRGADLLDSTARQIYLQRLLGYPTPRYLHVPLLMNTTGE 239
           G   Y   V VDD++  +T ++RG D +++T RQI + + LG   P Y H+P+++   G 
Sbjct: 185 GTPTYNFCVAVDDSDMKITHVIRGDDHVNNTPRQINILKALGAELPHYGHLPMILGADGA 244

Query: 240 KFSKQNGAQALDLGQPLQ-----ALQQAAAFLGLETGAARDREGFWRLALTGW 287
           K SK++GA ++ +  P Q     A+    A LG   G   D E F     T W
Sbjct: 245 KLSKRHGAVSV-MDYPAQGYLPEAMLNYLARLGWSHG---DDEVFSMEQFTEW 293


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.137    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 535,163
Number of extensions: 19694
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 2
Length of query: 294
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 213
Effective length of database: 733,452
Effective search space: 156225276
Effective search space used: 156225276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)