BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3480.p
         (233 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093723|ref|YP_001098798.1| hypothetical protein HEAR0453 [...   360   e-101
gi|134093320|ref|YP_001098395.1| putative Pirin-related protein ...    84   4e-18

>gi|134093723|ref|YP_001098798.1| hypothetical protein HEAR0453
           [Herminiimonas arsenicoxydans]
          Length = 233

 Score =  360 bits (924), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 172/233 (73%), Positives = 197/233 (84%)

Query: 1   MIEIRKANDRGHANHGWLDSYHSFSFADYYDPKHMGFGPLRVINEDRVAAGQGFGTHGHR 60
           M+EIRK+ DRGHANH WLDSYHSFSFA+YYD KHMGFGPLRVINEDRV AG GFGTHGHR
Sbjct: 1   MLEIRKSEDRGHANHSWLDSYHSFSFAEYYDEKHMGFGPLRVINEDRVHAGGGFGTHGHR 60

Query: 61  DMEIISYVLEGELAHKDSMGNGSVIRPGDVQRMSAGTGVRHSEYNHSQDGTTHFLQIWIM 120
           DMEIISYVLEGELAHKDSMG GSVIRPGDVQRMSAGTGVRHSE+NH++D TTHFLQIWI 
Sbjct: 61  DMEIISYVLEGELAHKDSMGTGSVIRPGDVQRMSAGTGVRHSEFNHAKDQTTHFLQIWIQ 120

Query: 121 PDRAGAEPGYQEAHFSAADKEGKLRLVASPDGRDGSVSMNQDALLFAGLFDGTQAAQYTL 180
           P+  G  P Y+E +FSA +K G+LRL+AS DG DGSV ++QDA L+AGLFDG + A   +
Sbjct: 121 PNVNGIPPSYEEKNFSAEEKRGRLRLIASSDGADGSVLIHQDAKLYAGLFDGAETASLPI 180

Query: 181 PQGRLGYVHVARGKVSVNGQSLEAGDAVKLSAVDRIEIADGEKAEVLLFDLPR 233
             GRL YVHVARG V+VNG  L+ GDAVKLS V  ++I+DG++AEVL+FDL R
Sbjct: 181 AVGRLAYVHVARGAVTVNGVELKTGDAVKLSDVTTVDISDGQQAEVLVFDLVR 233


>gi|134093320|ref|YP_001098395.1| putative Pirin-related protein
           [Herminiimonas arsenicoxydans]
          Length = 289

 Score = 84.3 bits (207), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 97/207 (46%), Gaps = 18/207 (8%)

Query: 38  GPLRVINEDRVAAGQGFGTHGHRDMEIISYVLEGELAHKDSMGNGSVIRPGDVQRMSAGT 97
           GP      DR     G G+H HR  E ++ V +GE+AH+DS G G VI PGDVQ M+AG 
Sbjct: 45  GPAEFPASDRPP---GVGSHPHRGFETVTIVYKGEVAHRDSTGQGGVIGPGDVQWMTAGA 101

Query: 98  GVRHSEYNHS----QDGTTHFLQIWI-MPDR-AGAEPGYQEAHFS------AADKEGKLR 145
           G+ H E++        GT   +Q+W+ +P R     PGYQ    S        D  G LR
Sbjct: 102 GILHEEFHSDAFTRSGGTLEMVQLWVNLPARDKMTPPGYQAIVSSDIPVVPLPDDAGTLR 161

Query: 146 LVASP-DGRDGSVSMNQDALLFAGLFDGTQAAQYTLPQGRLGYVHVARGKVSVNGQSL-- 202
           ++A   +G  G+        ++         + +TLP G    + V RG V +N + +  
Sbjct: 162 VIAGDYEGHAGAAHTFTPMQVWDLSLKQGSKSDFTLPDGWNSALIVLRGTVLINDERVAR 221

Query: 203 EAGDAVKLSAVDRIEIADGEKAEVLLF 229
           EA   +  S+  +I I     A VLL 
Sbjct: 222 EAQMVLLDSSGRKIRIEANSDAVVLLL 248


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 509,709
Number of extensions: 22446
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 2
Length of query: 233
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 154
Effective length of database: 740,042
Effective search space: 113966468
Effective search space used: 113966468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)