BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3479.p
         (191 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094434|ref|YP_001099509.1| tryptophan repressor binding pr...    57   5e-10

>gi|134094434|ref|YP_001099509.1| tryptophan repressor binding
           protein [Herminiimonas arsenicoxydans]
          Length = 192

 Score = 57.4 bits (137), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 13/119 (10%)

Query: 7   VYHSGYGHTKKQAEAVQAGAAGVAGAAVELIAISAEGTITDE-------------QWASL 53
           +Y+S +G T+K AE +  G  GVAG    L  + A  T+T+              +   L
Sbjct: 1   MYYSRHGSTRKLAELIGQGIDGVAGCEARLRTVPAVSTVTEATAPDIPTEGAPYVELRDL 60

Query: 54  DAADAIIFGSPTYMGTVSWQFKKFADASSKPWFSQKWKDKVGAAFTNSATMNGDKLSTL 112
           +   A+  GSPT  G ++   K F D +S  W S     K    FT++ +++G + +TL
Sbjct: 61  EECAALALGSPTRFGNMAAPMKYFWDGTSSQWLSGTLAGKPACVFTSTGSLHGGQETTL 119


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.314    0.127    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 324,984
Number of extensions: 11701
Number of successful extensions: 24
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 114
Effective length of database: 746,632
Effective search space: 85116048
Effective search space used: 85116048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)