BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3478.p
         (293 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093725|ref|YP_001098800.1| rhodanese superfamily protein [...   417   e-118
gi|134096435|ref|YP_001101510.1| hypothetical protein HEAR3282 [...   143   8e-36

>gi|134093725|ref|YP_001098800.1| rhodanese superfamily protein
           [Herminiimonas arsenicoxydans]
          Length = 314

 Score =  417 bits (1073), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 198/271 (73%), Positives = 230/271 (84%)

Query: 8   YVNIAAYKFVSFDDTVEKRPVFLEFCRQHNLRGTVILSPEGINLFLAGLRQDIDAFLNWL 67
           +VNIAAYKF+SFDDTVEKRP F+  C Q +L+GT++LSPEGINLFLAG R DID+FL W+
Sbjct: 37  FVNIAAYKFISFDDTVEKRPEFIAKCAQLSLKGTILLSPEGINLFLAGTRADIDSFLAWI 96

Query: 68  RADARFTDLIVKESYSEKQPFTRMLVKLKAEIITMKHPLIKPELGRAPFVEPRELKRWLD 127
           RAD RF+DL VKESYS+ QPF  MLVKLK EIITMKHPLIKPE GRAP V+   LKRWLD
Sbjct: 97  RADVRFSDLEVKESYSDDQPFKYMLVKLKREIITMKHPLIKPEEGRAPSVDATTLKRWLD 156

Query: 128 QGHDDEGRPVVMVDTRNGFEVDVGTFDNTVDYRISKFTEFPKVIEDHKADFEGKTVVTFC 187
           QGHDD+G+PVVM+DTRN FEVDVGTFDNT+DYRI KF+EFP ++  +K D   KTVVTFC
Sbjct: 157 QGHDDDGKPVVMMDTRNAFEVDVGTFDNTIDYRIEKFSEFPDIVASNKDDLNDKTVVTFC 216

Query: 188 TGGIRCEKAAIHMQNIGYDHVYQLEGGILKYFEDVGGAHYNGDCFVFDYRTALSPELKET 247
           TGGIRCEKAAI+M+N+GYD VYQL+GGILKYFE+VGG HY GDCFVFD+RTAL+P L+ T
Sbjct: 217 TGGIRCEKAAIYMKNVGYDSVYQLDGGILKYFEEVGGDHYTGDCFVFDHRTALNPRLEPT 276

Query: 248 QTAQCFACRAVVTPREQLSPDYVPGKSCPHC 278
            T  C AC A V+PREQL+P++V G SCPHC
Sbjct: 277 LTTTCTACNATVSPREQLAPEFVEGVSCPHC 307


>gi|134096435|ref|YP_001101510.1| hypothetical protein HEAR3282
           [Herminiimonas arsenicoxydans]
          Length = 279

 Score =  143 bits (361), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 97/250 (38%), Positives = 133/250 (53%), Gaps = 19/250 (7%)

Query: 9   VNIAAYKFVSFDDTVEKRPVFLEFCRQHNLRGTVILSPEGINLFLAGLRQDIDAFLNWLR 68
           ++ A Y+F   DD            R  +L G+++++ EGIN  LAG    + AF   LR
Sbjct: 13  LHTAFYQFSRLDDADAVAMHLRALTR--DLLGSILVADEGINGVLAGKTGAVSAFEQALR 70

Query: 69  AD----ARFTDLIVKESYSEKQPFTRMLVKLKAEIITMKHPLIKPELGRAPF-VEPRELK 123
            D     +F  +  K S  +  PF RM V  K+EI+ +    +   +GR    V P E +
Sbjct: 71  HDPFFQGKFAGIAFKHSACDTAPFARMKVHRKSEIVYLGVEGVDA-VGRTGIDVSPEEWR 129

Query: 124 RWLDQGHDDEGRPVVMVDTRNGFEVDVGTFDNTVDYRISKFTEFPKVIEDHKADF--EGK 181
             + Q  DD    VV++D RN FE  +G F N VD  +  F +FP  IE H   +  EGK
Sbjct: 130 DLIAQ--DD----VVVIDNRNSFEFKLGKFRNAVDPGVDNFRDFPTYIEQHVPQWKAEGK 183

Query: 182 TVVTFCTGGIRCEKAAIHMQNIGYDHVYQLEGGILKYFEDVGGAH--YNGDCFVFDYRTA 239
            V  +CTGGIRCEK +  M ++G   VYQLEGG+L YFE +  A   + G+CFVFD R A
Sbjct: 184 RVAMYCTGGIRCEKTSAWMLDMGV-PVYQLEGGVLNYFEKMPDAEKDWEGECFVFDNRIA 242

Query: 240 LSPELKETQT 249
           L  +L+ET T
Sbjct: 243 LDTKLQETAT 252


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.138    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 571,542
Number of extensions: 23569
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 2
Length of query: 293
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 212
Effective length of database: 733,452
Effective search space: 155491824
Effective search space used: 155491824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)