BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3472.p (580 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093728|ref|YP_001098803.1| lipid ABC transporter membrane/... 810 0.0 gi|134094288|ref|YP_001099363.1| putative ABC transporter permea... 297 1e-81 gi|134093506|ref|YP_001098581.1| ABC transporter ATP-binding pro... 276 2e-75 gi|134096472|ref|YP_001101547.1| putative ABC transporter [Hermi... 275 6e-75 gi|134096161|ref|YP_001101236.1| ABC transporter ATP-binding pro... 207 1e-54 >gi|134093728|ref|YP_001098803.1| lipid ABC transporter membrane/ATP-binding protein [Herminiimonas arsenicoxydans] Length = 581 Score = 810 bits (2092), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/575 (69%), Positives = 487/575 (84%) Query: 2 LSNNMKRLAALHWPYKKRLSLAFIAMIVTAATEPVVPYIFQVLLDKGFVGKPAFSLWLVP 61 +S ++KRL + PYKKRL++AFI MI+TA TEP+ P + ++LLDKGF GKP FSLWLVP Sbjct: 3 ISPHLKRLYGMLGPYKKRLAVAFIGMIMTALTEPMFPAVMRLLLDKGFGGKPTFSLWLVP 62 Query: 62 AAVIGIFFIRGIATFTSSYMMTWVSTRILNELRRQMFARMLDLPLHFYATNTVGKVINSM 121 A+IGIF +RGI+TFT++Y MTWVS+R+L+ LR++MF R+LD+PL FY T++VG+VINSM Sbjct: 63 LAIIGIFVLRGISTFTTTYTMTWVSSRLLSTLRKKMFERILDVPLGFYGTHSVGRVINSM 122 Query: 122 MFEVQQIIDMVTKVFTSILRSALTVLGLLAWLLYLNWVLTIVTLVLLPLVTLVVRTTGKR 181 MFEVQQII+M+TKV+TSI+R +LTV+ LLA+L +LNW LT+V LVLLPL+ +VVR TGKR Sbjct: 123 MFEVQQIIEMITKVYTSIIRDSLTVIVLLAFLFWLNWRLTLVALVLLPLIAIVVRFTGKR 182 Query: 182 LKKLNRDSLAVNAEMTQVIEETTRAQQVIKIFGGQDYEKERFNRRAENLRSYTMRMTAAF 241 +++L R+ AVNAEMTQVIEE+TRA QVIKIFGG YE +RF RA+ LRSYTMRM + Sbjct: 183 VRRLTREYQAVNAEMTQVIEESTRANQVIKIFGGHQYENDRFEVRADKLRSYTMRMASTL 242 Query: 242 SSTVPITQLMTATAVAVVIVMALIQSGNGQITVGGFVSFITAMLMLLTPLKQLAEINGPL 301 ++T P+TQ+M + AVA+VIV+ALIQS Q TVGGFVSFITAMLMLL PLK +AE+NGPL Sbjct: 243 AATTPVTQIMASCAVAIVIVIALIQSEQNQTTVGGFVSFITAMLMLLAPLKNIAEVNGPL 302 Query: 302 QRGMAAAEEVYKLIDKTTERTTGQALSGRATGRLDFVEVGFTYPGHEQLALKNINLHVEA 361 Q+G+ AAE V+ LID ERT+G+ L RA G+LDF+ +GF+YPGH+ +AL++INL V Sbjct: 303 QKGLTAAEAVFGLIDAKPERTSGKTLEARAAGKLDFINLGFSYPGHQSMALEDINLSVLP 362 Query: 362 GETIAFVGMSGGGKSTLVSLIPGFYSCTAGEIRLDGRDIETISLESLRRQIAMVNQNTVL 421 GETIAFVGMSGGGKSTLV+L+PGFY T GEIRLD IE I+L SLRRQIAMV+Q+ VL Sbjct: 363 GETIAFVGMSGGGKSTLVNLVPGFYPATVGEIRLDDVPIEEIALTSLRRQIAMVSQHVVL 422 Query: 422 FDDTLAANIAYGDATPDPARIEAAVEAAHLGDVVAGLAEGLQTRLGDNGSRLSGGQRQRV 481 FDDT+AANIAYGD TPD ARI AA AAHL DV+AGL +GL+T +GDNGSRLSGGQRQR+ Sbjct: 423 FDDTIAANIAYGDETPDRARILAAATAAHLDDVIAGLPQGLETMIGDNGSRLSGGQRQRL 482 Query: 482 AIARAIYKDAPILILDEATSALDTESERAVQAALERLMQGRTTFVIAHRLSTIERADRIV 541 AIARAIYKDAPILILDEATSALD+ESERAVQAAL+ LM+GRTT VIAHRLSTIERADRI Sbjct: 483 AIARAIYKDAPILILDEATSALDSESERAVQAALDALMKGRTTLVIAHRLSTIERADRIA 542 Query: 542 VLAHGQIAEIGTHQELLQKEGVYANLYRLQFSQQK 576 VLA G+I E+G+HQELL+K VYANLY LQF++++ Sbjct: 543 VLAEGRIVELGSHQELLEKNAVYANLYHLQFAKEE 577 >gi|134094288|ref|YP_001099363.1| putative ABC transporter permease [Herminiimonas arsenicoxydans] Length = 579 Score = 297 bits (760), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 208/589 (35%), Positives = 312/589 (52%), Gaps = 29/589 (4%) Query: 6 MKRLAALHWPYKKRLSLAFIAMIVTAATEPVVPYIFQVLLDKGFVGKPAF---SLWLVPA 62 M+ L PYKK+ +LA IA+IV AA +PY F+ ++D GF S+ Sbjct: 1 MRGLLKFLLPYKKQFALAGIALIVAAAATLAIPYAFRQMIDLGFGANGIHDTGSINTYFL 60 Query: 63 AVIGIFFIRGIATFTSSYMMTWVSTRILNELRRQMFARMLDLPLHFYATNTVGKVINSMM 122 A+ G+ I +AT YM++W+ R+ ++R +++ ++ F+ T G+V++ + Sbjct: 61 ALFGVACILALATAARFYMVSWLGERVTADVRNAVYSHVVTQSPQFFETTQSGEVLSRLT 120 Query: 123 FEVQQIIDMVTKVFTSILRSALTVLGLLAWLLYLNWVLTIVTLVLLPLVTLVVRTTGKRL 182 + I ++ + LR+ L G L L + L+ + LV+L L + G+R+ Sbjct: 121 TDTTLIQTLIGTSISMALRNTLLFAGGLVMLFVTSIKLSSIILVMLIATVLPIVWFGRRV 180 Query: 183 KKLNRDSLAVNAEMTQVIEETTRAQQVIKIFGGQDYEKERFNRRAENLRSYTMRMTAAFS 242 + L+R S A+ + + E A ++ F + E ERF++ E+ MR A S Sbjct: 181 RSLSRASQDRVADSSALAGEILNAMPTVQAFTHEKIESERFSKTVEDAFKTAMRRIRARS 240 Query: 243 STVPITQLMTATAVAVVIVMALIQSGNGQITVGGFVSFITAMLMLLTPLKQLAEINGPLQ 302 I L+ A+ V+ + +G ++ G FI ++ + L+E+ G Q Sbjct: 241 LLTMIAILLIFGAIVFVLWLGAHAVIDGTMSGGELGQFILYSAIVAGAIGALSEVVGDAQ 300 Query: 303 RGMAAAEEVYKLIDKTT-------------ERTTGQALSGRATGRLDFVEVGFTYPGHE- 348 R A E + +L+ + R G +L+ LD V F YP Sbjct: 301 RAAGATERLLELLAVQSPISSPAVPLPLPPRRANGSSLA------LDLVS--FYYPSRPL 352 Query: 349 QLALKNINLHVEAGETIAFVGMSGGGKSTLVSLIPGFYSCTAGEIRLDGRDIETISLESL 408 A+ N ++ ++AGET+A VG SG GK++L L+ FY G I LDG DI + L +L Sbjct: 353 TPAISNFSIAIKAGETVAVVGPSGAGKTSLFQLLLRFYDPQEGVIELDGVDIRQLDLHAL 412 Query: 409 RRQIAMVNQNTVLFDDTLAANIAYG--DATPDPARIEAAVEAAHLGDVVAGLAEGLQTRL 466 R I +V Q+TV+F NI YG DA+ + A + AAH + + L EG Q+ L Sbjct: 413 RNTIGIVPQDTVIFSANAMENIRYGRPDASDEEVIAVAKMAAAH--EFIDRLPEGYQSFL 470 Query: 467 GDNGSRLSGGQRQRVAIARAIYKDAPILILDEATSALDTESERAVQAALERLMQGRTTFV 526 G+ G RLSGGQRQR+AIARA+ K+ P+L+LDEATSALD ESER VQ+ALE M GRTT V Sbjct: 471 GERGVRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQSALEAAMVGRTTLV 530 Query: 527 IAHRLSTIERADRIVVLAHGQIAEIGTHQELLQKEGVYANLYRLQFSQQ 575 IAHRL+T++RA RI+V+ HG I E GTH L+ G+YA+L LQF Q Sbjct: 531 IAHRLATVQRAHRIIVMEHGHIVETGTHASLVAAGGLYASLAALQFGQH 579 >gi|134093506|ref|YP_001098581.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 648 Score = 276 bits (706), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 208/598 (34%), Positives = 319/598 (53%), Gaps = 43/598 (7%) Query: 6 MKRLAALHWPYKKRLSLAFIAMIVTAATEPVVPYIFQVLLDKGFVGKPA--FSLWLVPAA 63 +K L W YK R++LA + +I VP + + L+D G PA +L ++P Sbjct: 43 LKTLIPYLWTYKWRVALALLFLIAAKFANVGVPLVLKRLID-GLTIDPASPHALLVLP-- 99 Query: 64 VIGIFFIRGIATFTSS-------YMMTWVSTRILNELRRQMFARMLDLPLHFYATNTVGK 116 +GI F G +++ Y V+ R + + Q+F + L L F+ G Sbjct: 100 -VGILFAYGALRLSTTLFTELREYTFAKVTQRAVRTIALQVFRHLHALSLRFHLNRQTGG 158 Query: 117 VINSMMFEVQQIIDMVTKVFTSILRSALTVLGLLAWLL--YLNW--VLTIVTLVLLPLVT 172 + + + I +V+ SIL + + + +L +L+ Y W ++T V LV T Sbjct: 159 MTRDIERGTRGISSLVSYTLFSILPTLVEITLVLGYLVLHYDIWFSIITAVALVSYIAFT 218 Query: 173 LVV---RTTGKRLKKLNRDSLAVNAEMTQVIEETTRAQQVIKIFGGQDYEKERFNRRAEN 229 +VV RT +R + DS A + +I T +K FG +DYE +R++ E Sbjct: 219 VVVTEWRTHFRRTMN-DLDSKANTKAIDSLINYET-----VKYFGNEDYEAKRYD---EG 269 Query: 230 LRSYTMRMTAAFSSTVPITQLMTAT----AVAVVIVMALIQSG--NGQITVGGFVSFITA 283 L+ Y TAA S ++ L T AVAV +++ G +G +T+G V Sbjct: 270 LKRYE---TAAVKSQTSLSVLNTGQSSIIAVAVTLILWRATQGVISGTMTLGDLVLVNAF 326 Query: 284 MLMLLTPLKQLAEINGPLQRGMAAAEEVYKLIDKTTE---RTTGQALSGRATGRLDFVEV 340 M+ L PL L I +++ +A E ++ L+D+ E + QAL + + F V Sbjct: 327 MIQLYIPLNFLGVIYREIKQSLADMERLFSLLDQHREIADKPNTQALVVQG-AEVKFSHV 385 Query: 341 GFTYPGHEQLALKNINLHVEAGETIAFVGMSGGGKSTLVSLIPGFYSCTAGEIRLDGRDI 400 GF+Y Q+ L +++ + AG T A VG SG GKSTL L+ FY G I +DG+D+ Sbjct: 386 GFSYEAKRQI-LFDVDFTIAAGTTTAVVGHSGSGKSTLSRLLFRFYDVNEGAILIDGQDV 444 Query: 401 ETISLESLRRQIAMVNQNTVLFDDTLAANIAYGDATPDPARIEAAVEAAHLGDVVAGLAE 460 ++ SLR I +V Q+TVLF+DT+ NIAYG I AA ++A++ D + L + Sbjct: 445 RDVTQASLRNAIGIVPQDTVLFNDTIEYNIAYGKPGASKDDIVAAAKSAYIHDFIESLPD 504 Query: 461 GLQTRLGDNGSRLSGGQRQRVAIARAIYKDAPILILDEATSALDTESERAVQAALERLMQ 520 G T +G+ G +LSGG++QRVAIAR + K ILI DEATSALD+++E+A+QA L+ + + Sbjct: 505 GYATMVGERGLKLSGGEKQRVAIARTLLKHPAILIFDEATSALDSKAEQAIQAQLKEIAK 564 Query: 521 GRTTFVIAHRLSTIERADRIVVLAHGQIAEIGTHQELLQKEGVYANLYRLQFSQQKEA 578 RTT VIAHRLSTI A +I+VL HG+I E GTH +LL +G YA ++ Q ++Q E+ Sbjct: 565 DRTTMVIAHRLSTIVDAAQILVLDHGRIVERGTHAQLLAADGAYAQMWARQQARQDES 622 >gi|134096472|ref|YP_001101547.1| putative ABC transporter [Herminiimonas arsenicoxydans] Length = 726 Score = 275 bits (702), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 173/514 (33%), Positives = 276/514 (53%), Gaps = 18/514 (3%) Query: 76 FTSSYMMTWVSTRILNELRRQMFARMLDLPLHFYATNTVGKVINSMMFEVQQIIDMVTKV 135 + +Y++ VS RI +LR + +L L L ++ G ++ + E +I ++ Sbjct: 213 WARTYILALVSERIGADLRTTTYEHLLRLSLEYFGGKRTGDLMTRIGSETDRICVFLSLH 272 Query: 136 FTSILRSALTVLGLLAWLLYLNWVLTIVTLVLLPLVTLVVRTTGKRLK----KLNRDSLA 191 L ++ A L+ +N L +VTL+ LP + ++ +L+ K++R Sbjct: 273 LLDFFTDVLMIIMTAAILISINPWLALVTLLPLPFIAWMIHVVRDKLRNGFEKIDR---- 328 Query: 192 VNAEMTQVIEETTRAQQVIKIFGGQDYEKERFNRRAENLRSYTMRMTAAFSSTVPITQLM 251 + +++T V+ +T +V+K F + E RF ++ + R+ +S P L+ Sbjct: 329 IWSQVTNVLADTIPGIRVVKAFAQEKREAVRFREANKHNLAINDRVNKVWSLFSPTVTLL 388 Query: 252 TATAVAVVIVMALIQSGNGQITVGGFVSFITAMLMLLTPLKQLAEINGPLQRGMAAAEEV 311 T + VV + + Q G ITVG +F+ + T L ++ I Q+ A+ + Sbjct: 389 TEIGLLVVWALGIWQVSQGLITVGVLTAFLAYITRFYTRLDSMSRIVSVTQKAATGAKRI 448 Query: 312 YKLIDKTT---ERTTGQALSGRATGRLDFVEVGFTYPGHEQLALKNINLHVEAGETIAFV 368 + ++D + E T L+ G++ +GF Y + ++ ++L ++ GE I V Sbjct: 449 FDILDHVSSVPEATNPVHLTN-VQGKITIKNIGFRY--GNRAVIRGLDLDIQPGEMIGLV 505 Query: 369 GMSGGGKSTLVSLIPGFYSCTAGEIRLDGRDIETISLESLRRQIAMVNQNTVLFDDTLAA 428 G SG GKSTLV+LI FY + G I +DG D+ +I + RR I +V Q LF T+A Sbjct: 506 GHSGSGKSTLVNLICRFYDVSDGAILVDGIDVRSIPIPEYRRNIGLVLQEPFLFFGTIAD 565 Query: 429 NIAYG--DATPDPARIEAAVEAAHLGDVVAGLAEGLQTRLGDNGSRLSGGQRQRVAIARA 486 NIAYG DA+ + A AH + + L G + +G+ G LSGG+RQR++IARA Sbjct: 566 NIAYGKPDASREEIIAAARAANAH--EFILRLPHGYDSMVGERGQTLSGGERQRISIARA 623 Query: 487 IYKDAPILILDEATSALDTESERAVQAALERLMQGRTTFVIAHRLSTIERADRIVVLAHG 546 + D ILILDEATS++DT +ER +Q AL+ L++GRTT IAHRLST+ RADRIVV+ G Sbjct: 624 LLIDPHILILDEATSSVDTTTEREIQKALDNLVRGRTTIAIAHRLSTLRRADRIVVMDRG 683 Query: 547 QIAEIGTHQELLQKEGVYANLYRLQFSQQKEASL 580 QI E+G+H ELL +EG Y LY+ Q Q ++ L Sbjct: 684 QIVEVGSHDELLAREGAYYKLYQAQQRQAEQDML 717 >gi|134096161|ref|YP_001101236.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 618 Score = 207 bits (528), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 112/244 (45%), Positives = 151/244 (61%), Gaps = 6/244 (2%) Query: 333 GRLDFVEVGFTYPGHEQLALKNINLHVEAGETIAFVGMSGGGKSTLVSLIPGFYSCTAGE 392 G L F VGF Y G + + NL + GE + VG SG GKST+V+L+ FY G Sbjct: 358 GELKFDHVGFAYGG-TRAVIDQFNLTIRPGEKVGLVGRSGAGKSTIVNLLLRFYDLEQGR 416 Query: 393 IRLDGRDIETISLESLRRQIAMVNQNTVLFDDTLAANIAYGDATPDPARIEAAVEAAHLG 452 I +DG+DI ++ SLR Q+ MV Q+T L ++ NI YG A + A + A Sbjct: 417 ILIDGQDIAHVTQNSLRAQVGMVTQDTSLLHRSVRDNILYGRPDASEADMIDAAKRAEAH 476 Query: 453 DVVAGLAEG-----LQTRLGDNGSRLSGGQRQRVAIARAIYKDAPILILDEATSALDTES 507 D + L++ +G+ G +LSGGQRQR+AIAR + KDAPIL+LDEATSALD+E Sbjct: 477 DFILTLSDAKGRTAYDAHVGERGVKLSGGQRQRIAIARVMLKDAPILLLDEATSALDSEV 536 Query: 508 ERAVQAALERLMQGRTTFVIAHRLSTIERADRIVVLAHGQIAEIGTHQELLQKEGVYANL 567 E A+Q +L LM+G+T IAHRLSTI DR++VL G+I E G+H+ELLQ+ G+YA L Sbjct: 537 EAAIQTSLYELMEGKTVVAIAHRLSTIAAMDRLIVLDKGRIVEQGSHRELLQQNGLYARL 596 Query: 568 YRLQ 571 + Q Sbjct: 597 WAHQ 600 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.135 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 906,530 Number of extensions: 34436 Number of successful extensions: 264 Number of sequences better than 1.0e-08: 43 Number of HSP's gapped: 215 Number of HSP's successfully gapped: 46 Length of query: 580 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 493 Effective length of database: 713,682 Effective search space: 351845226 Effective search space used: 351845226 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 131 (55.1 bits)