BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3469.p
         (487 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093809|ref|YP_001098884.1| RNase G [Herminiimonas arsenico...   870   0.0  
gi|134095278|ref|YP_001100353.1| RNase E [Herminiimonas arsenico...   261   4e-71

>gi|134093809|ref|YP_001098884.1| RNase G [Herminiimonas
           arsenicoxydans]
          Length = 487

 Score =  870 bits (2247), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/487 (85%), Positives = 452/487 (92%)

Query: 1   MSEDILINITPQETRVALILQGAVQELHIERTLSRGLAGNIYLGKVVRVLPGMQSAFIDI 60
           MSEDIL+N+TPQETRVAL+LQGAVQELHIERTLSRG+AGNIYLGKVVRVLPGMQSAFIDI
Sbjct: 1   MSEDILVNVTPQETRVALVLQGAVQELHIERTLSRGMAGNIYLGKVVRVLPGMQSAFIDI 60

Query: 61  GLERAAFLHVADIWEARPHDGQNAPAIPIEKLLHDGQTITVQVIKDPIGTKGARLSTQIS 120
           GLERAAFLHVADIW+AR HDG     IPIE++L DGQ+ITVQVIKDPIGTKGARLSTQIS
Sbjct: 61  GLERAAFLHVADIWDARSHDGLPTTPIPIERILFDGQSITVQVIKDPIGTKGARLSTQIS 120

Query: 121 IAGRMLVYLPQDKHIGISQRIENEAERELLRSKVQALLPPEEKGGFIIRTMAEDASDADL 180
           IAGRMLVYLPQ+ HIGISQRIENE ERELLR KVQ L+   EKGGFIIRTMAEDASD DL
Sbjct: 121 IAGRMLVYLPQESHIGISQRIENEVERELLREKVQKLMQEGEKGGFIIRTMAEDASDHDL 180

Query: 181 QMDVEYLRTTWATITKQAKTKPAPTLLHQDLSLAQRVLRDFVSDHTATIQVDSRENFHML 240
           QMDV+YLR TW+ IT+ AKTKPAP+LL+QDL LAQRV+RDFV+D TA+IQVDSRENF  L
Sbjct: 181 QMDVDYLRKTWSNITQLAKTKPAPSLLYQDLDLAQRVMRDFVNDETASIQVDSRENFQKL 240

Query: 241 QEFGAIYTPSVLTKLMHYRGERPLFDLYGVEEEIERALGRRVDLKSGGYLIVDQTEAMTT 300
           Q+FG +YTPSVLTKL HY GERPLFDLYGVEEEI+RALGRRVDLKSGGYLIVDQTEAMTT
Sbjct: 241 QQFGELYTPSVLTKLAHYPGERPLFDLYGVEEEIQRALGRRVDLKSGGYLIVDQTEAMTT 300

Query: 301 IDVNTGSFVNGRNFDDTIFKTNLEAAHAIARQLRLRNLGGIIILDFIDMESTEHRQAVLA 360
           IDVNTGSFVNGRNFDDTIFKTNLEA+HAIARQLRLRNLGG++ILDFIDME+ EHR AVL+
Sbjct: 301 IDVNTGSFVNGRNFDDTIFKTNLEASHAIARQLRLRNLGGMVILDFIDMENVEHRNAVLS 360

Query: 361 ELGKALQRDRTKISVSGFSTLGLVEMTRKRTRESLAHILCETCPACKGRGQVKTSRTVCY 420
           EL +AL RDRTK+SVSGFS LGLVEMTRKRTRESLAHILCE CPAC G+GQVKT+RT+CY
Sbjct: 361 ELNRALARDRTKVSVSGFSALGLVEMTRKRTRESLAHILCEPCPACGGKGQVKTARTICY 420

Query: 421 EILREVMREAKQFNPREFRILASQVVVDMFLEEESQHLAMLGDFIGKPISLQVQSDYQQE 480
           EILRE+ REAKQFNPREFRILASQVV+DMFLEEESQHLAMLGDF+GKPISLQV++ Y QE
Sbjct: 421 EILRELTREAKQFNPREFRILASQVVIDMFLEEESQHLAMLGDFLGKPISLQVEAVYHQE 480

Query: 481 QYDIILM 487
           QYD+ILM
Sbjct: 481 QYDVILM 487


>gi|134095278|ref|YP_001100353.1| RNase E [Herminiimonas
           arsenicoxydans]
          Length = 973

 Score =  261 bits (668), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 152/452 (33%), Positives = 248/452 (54%), Gaps = 4/452 (0%)

Query: 5   ILINITPQET-RVALILQGAVQELHIERTLSRGLAGNIYLGKVVRVLPGMQSAFIDIGLE 63
           +L N T QE  RVA++    + ++ IE T       NIY G + R+ P +++ F+  G +
Sbjct: 4   MLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVSYGED 63

Query: 64  RAAFLHVADIWEARPHDGQNAPAIPIEKLLHDGQTITVQVIKDPIGTKGARLSTQISIAG 123
           R  FL   ++      +G +     I+  L +GQ I VQV K+  G KGA L++ +S+AG
Sbjct: 64  RHGFLPFKEVARTYFKEGVDVRNASIKDALREGQEIMVQVEKEERGNKGAALTSFVSLAG 123

Query: 124 RMLVYLPQD-KHIGISQRIENEAERELLRSKVQALLPPEEKGGFIIRTMAEDASDADLQM 182
           R LV +P + +  G+S+R+E E  +EL  +  +  LP  +    I RT     +  +LQ 
Sbjct: 124 RYLVLMPNNPRGGGVSRRVEGEDRQELRETMDKLDLP--QGMSVIARTAGIGRNVDELQW 181

Query: 183 DVEYLRTTWATITKQAKTKPAPTLLHQDLSLAQRVLRDFVSDHTATIQVDSRENFHMLQE 242
           D+ YL   W  I    ++     L++Q+ SL  R +RD+       I +D+ + +   Q+
Sbjct: 182 DLNYLMQLWRAIEGAGQSGAGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDDIYEQAQQ 241

Query: 243 FGAIYTPSVLTKLMHYRGERPLFDLYGVEEEIERALGRRVDLKSGGYLIVDQTEAMTTID 302
           F +   P ++ ++  YR + PLF  + +E +IE A  R V L SGG +++D TEA+ ++D
Sbjct: 242 FMSHVMPDMVHRVKRYRDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSVD 301

Query: 303 VNTGSFVNGRNFDDTIFKTNLEAAHAIARQLRLRNLGGIIILDFIDMESTEHRQAVLAEL 362
           VN+     G + + T F TN EAA  +ARQLRLR+LGG+I++DFIDME++++++ V   L
Sbjct: 302 VNSARATRGSDIETTAFHTNCEAAEEVARQLRLRDLGGLIVIDFIDMENSKNQREVETRL 361

Query: 363 GKALQRDRTKISVSGFSTLGLVEMTRKRTRESLAHILCETCPACKGRGQVKTSRTVCYEI 422
             AL  DR ++ +   S  GL+E++R+R R SL+     TCP C G G ++ + +   ++
Sbjct: 362 KDALHYDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQV 421

Query: 423 LREVMREAKQFNPREFRILASQVVVDMFLEEE 454
           LR +  EA + N     + A   V    L E+
Sbjct: 422 LRIIQEEAMKENSASIHVQAPVDVAAFLLNEK 453


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.136    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 838,008
Number of extensions: 32911
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 2
Length of query: 487
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 402
Effective length of database: 720,272
Effective search space: 289549344
Effective search space used: 289549344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)