BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3468.p (204 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093810|ref|YP_001098885.1| hypothetical protein HEAR0552 [... 248 1e-67 gi|134095271|ref|YP_001100346.1| putative Maf-like protein [Herm... 88 3e-19 >gi|134093810|ref|YP_001098885.1| hypothetical protein HEAR0552 [Herminiimonas arsenicoxydans] Length = 206 Score = 248 bits (634), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 134/210 (63%), Positives = 154/210 (73%), Gaps = 10/210 (4%) Query: 1 MKQADHKIYLASKSPRRRELLRQIGIDFELLL------SDKEVDESVLPGEAPLDYVARV 54 MK HKIYLASKSPRRRELLRQIG++FELLL EV E V P E DYVARV Sbjct: 1 MKPLPHKIYLASKSPRRRELLRQIGVEFELLLLRDHTPRGPEVSEIVQPNERAEDYVARV 60 Query: 55 TRAKLDSAQQTMILRQLPHRPLLAADTTVVVDDLILGKPADHDEAVRMITLLSGRTHQVL 114 T K AQ+TM R+LP RP+LAADTTVV+D ILGKPA+ EAV M+ LSG THQVL Sbjct: 61 TLEKAAFAQKTMWWRKLPLRPILAADTTVVLDGRILGKPANTAEAVAMMQALSGHTHQVL 120 Query: 115 TSVAVGVTHGVDTEVWQIVQQSDVSFAALTDEAIAAYCNTVEPYDKAGAYGIQGLASVFI 174 T VAV HG +++Q Q+SDV+F L+DE I AYC T EPYDKAG YGIQG A++FI Sbjct: 121 THVAV--LHG--EQIYQTTQRSDVAFTKLSDEMIRAYCATAEPYDKAGGYGIQGQAALFI 176 Query: 175 SHIVGSHSGIMGLPLFETAQLLQQAGVRIL 204 I GS+SGIMGLPLFET +LL+QAG+RIL Sbjct: 177 QDIAGSYSGIMGLPLFETGKLLEQAGLRIL 206 >gi|134095271|ref|YP_001100346.1| putative Maf-like protein [Herminiimonas arsenicoxydans] Length = 204 Score = 88.2 bits (217), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 105/199 (52%), Gaps = 12/199 (6%) Query: 7 KIYLASKSPRRRELLRQIGIDFELLLSDKEVDESVLPGEAPLDYVARVTRAKLDSAQQTM 66 ++ L S S R+ELL ++G FE+++ + +DE+ +PGE+P T +L + + Sbjct: 9 RLILGSSSIYRKELLARLGFPFEVMVPN--IDETAMPGESP-----EATALRLAQQKAAV 61 Query: 67 ILRQLPHRPLLAADTTVVVDDLILGKPADHDEAVRMITLLSGRTHQVLTSVAV--GVTHG 124 I ++P+ ++ +D +D +GKP H+ A+R + + GR T++ + G T G Sbjct: 62 IAAKVPNTIVIGSDQVATLDGEQIGKPGTHENALRQLQKMRGRKVTFHTALCLFDGRT-G 120 Query: 125 VDTEVWQIVQ-QSDVSFAALTDEAIAAYCNTVEPYDKAGAYGIQGLASVFISHIVGSH-S 182 + + Q+ Q+ V+F L D + AY +PYD AG+ +GL I I S + Sbjct: 121 IASPQIQLENIQTFVTFRHLPDAELDAYLRIEQPYDCAGSAKNEGLGITIIEKIESSDPT 180 Query: 183 GIMGLPLFETAQLLQQAGV 201 + GLPL +L+QAG+ Sbjct: 181 ALTGLPLITLTSMLRQAGI 199 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.135 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 374,673 Number of extensions: 14829 Number of successful extensions: 49 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 44 Number of HSP's successfully gapped: 2 Length of query: 204 Length of database: 1,000,347 Length adjustment: 77 Effective length of query: 127 Effective length of database: 746,632 Effective search space: 94822264 Effective search space used: 94822264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)