BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3464.p
         (349 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093814|ref|YP_001098889.1| coproporphyrinogen III oxidase ...   481   e-137

>gi|134093814|ref|YP_001098889.1| coproporphyrinogen III oxidase
           [Herminiimonas arsenicoxydans]
          Length = 325

 Score =  481 bits (1237), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 219/306 (71%), Positives = 261/306 (85%)

Query: 44  VTTHSNTSTPTAAVKAYLQDLQERIVAALEAADGKSFLSDSWKRPEGGGGTSRLLEEGNL 103
           + T   + + ++AVK YL  LQ+RIV+ALE  DG++F +DSW+RPEGGGG SR++E GN+
Sbjct: 20  IFTVIASPSSSSAVKEYLLGLQQRIVSALEEVDGQAFGTDSWERPEGGGGISRIIENGNV 79

Query: 104 LERGGVGFSHVMGQKLPPSAAANRPQLAGRAWEAMGVSLVLHPRNPYVPTVHMNVRFFST 163
            ERGGVGFSHVMG+ LPPSAAANRP+LAGR WEAMGVSLVLHPRNPY PTVHMNVRFF  
Sbjct: 80  FERGGVGFSHVMGKNLPPSAAANRPELAGRNWEAMGVSLVLHPRNPYAPTVHMNVRFFIA 139

Query: 164 HAEGEEPVWWFGGGMDLTPYYGVKEDAVHFHRTCRAALQPYGEDLYPRFKAWCDEYFYLK 223
             EG EP+WWFGGGMDLTPYYG ++DA HFH+ CR AL  +G++++PR+K WCD+YFYLK
Sbjct: 140 STEGAEPIWWFGGGMDLTPYYGFEDDARHFHQVCRDALLAFGDEVHPRYKKWCDDYFYLK 199

Query: 224 HRKEPRGVGGIFFDDFNALPFEQAFAMQRSVGDAFLEAYLPIVAARRDTPYGERERDFQA 283
           HR+EPRGVGGIFFDD N   FE+ FA+Q+SVG+ F+EAY+PI+  R+D PYGERERDFQ 
Sbjct: 200 HRQEPRGVGGIFFDDLNEGGFERCFALQQSVGNHFVEAYVPILKLRKDMPYGERERDFQT 259

Query: 284 YRRGRYVEFNLVFDRGTLFGLQSGGRTESILMSMPPLVKWRYDWHPEPGSPEAALYSDFL 343
           YRRGRYVEFNLVFDRGTLFGLQSGGRTESILMSMPP+V WRY+W PE GS EA L+SDFL
Sbjct: 260 YRRGRYVEFNLVFDRGTLFGLQSGGRTESILMSMPPVVTWRYNWQPEAGSAEARLHSDFL 319

Query: 344 VHKEWL 349
           +H+EW+
Sbjct: 320 IHREWI 325


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.139    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 754,874
Number of extensions: 31832
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 266
Effective length of database: 726,862
Effective search space: 193345292
Effective search space used: 193345292
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)