BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3463.p
         (276 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096507|ref|YP_001101582.1| putative mechanosensitive ion c...    55   3e-09

>gi|134096507|ref|YP_001101582.1| putative mechanosensitive ion
           channel protein [Herminiimonas arsenicoxydans]
          Length = 422

 Score = 55.1 bits (131), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 90/193 (46%), Gaps = 14/193 (7%)

Query: 74  VMGILEVCGVPTTSFAAVIGAVGVALGVAWSGLLSNFAAGIFLVVLRPFKVGDYITAAG- 132
           V+ +L   GV  T+F A +G  G+A+ +A   +LS+  A + + + +PF+VGD+I     
Sbjct: 197 VLTVLANLGVNITAFVASLGIGGIAIALALQTILSDLFASLSIGLDKPFEVGDFIIVDEV 256

Query: 133 QTGSVSDIGLVTTIITTDNNLRVIIGNNKLFSENIINYNVNATRRTDLRCQIAYSVDPQQ 192
             G+V  IG+ TT + +    +++  N +L    I NY   A RR      I Y   P  
Sbjct: 257 MLGTVEYIGVKTTRLRSLGGEQLVRSNTELLKSVIRNYKRMAERRIVFSFGIRYET-PLA 315

Query: 193 AIAK----LTDRITAIPNVLQTPAPGIAIQEFNATGTLIAIRVHAPTPNFGQVYNDVQNA 248
            + +    L + I+AI N     A  +   +F A+     +  +  + ++   Y D+Q  
Sbjct: 316 KVGQLGSVLGEIISAIDNTRFDRAHFV---KFGASSLDFEVVYYVLSSDY-NTYMDIQQR 371

Query: 249 I----AEVCLKQG 257
           I     + C ++G
Sbjct: 372 INLELMQACAQRG 384


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.138    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 436,595
Number of extensions: 15160
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 196
Effective length of database: 736,747
Effective search space: 144402412
Effective search space used: 144402412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 128 (53.9 bits)