BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3461.p
         (241 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093819|ref|YP_001098894.1| hypothetical protein HEAR0561 [...   432   e-123

>gi|134093819|ref|YP_001098894.1| hypothetical protein HEAR0561
           [Herminiimonas arsenicoxydans]
          Length = 242

 Score =  432 bits (1111), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 202/241 (83%), Positives = 225/241 (93%)

Query: 1   MAGHSKWANIQHRKGRQDEKRGRVWTRLIKEITVAARMGGGDPDTNPRLRLAVDRASDAN 60
           MAGHSKWANIQHRKGRQDEKRG++WTRLIKEITVAARMGGGD   NPRLRLAVD+A+DAN
Sbjct: 1   MAGHSKWANIQHRKGRQDEKRGKIWTRLIKEITVAARMGGGDIAANPRLRLAVDKAADAN 60

Query: 61  MPKDNVTRAIQRGTGALDGVNYEEVRYEGYGINGAAIIVDCMTDNRVRTVAEVRHAFSKF 120
           MPKDNVTRAIQRG+G L+GVNYEE+RYEGYGINGAAI+VDCMTDNRVRTVAEVRHAFSKF
Sbjct: 61  MPKDNVTRAIQRGSGGLEGVNYEEIRYEGYGINGAAILVDCMTDNRVRTVAEVRHAFSKF 120

Query: 121 GGNMGTEGSVAFLFKHCGQLMYAPGTDENAVMEAALEAGAEDVITDDEGGIEVLTAPNDF 180
           GGNMGTEGSVAFLFKHCGQ  +APGTDE+ +MEAALEAGAEDV TD+EGGIEV+  P+DF
Sbjct: 121 GGNMGTEGSVAFLFKHCGQFFFAPGTDEDKLMEAALEAGAEDVTTDEEGGIEVICPPHDF 180

Query: 181 AAVKSAMEAAGFKAEVAEITMKPSTETVFAGEDGVKMQKLLDALENLDDTQELYTNAVIE 240
           +AVK A+ AAGFKAE+AE+ MKP+TETVF G+D VKMQKLLDALENLDD QE++TNAVIE
Sbjct: 181 SAVKDALAAAGFKAELAEVVMKPATETVFEGDDAVKMQKLLDALENLDDVQEVFTNAVIE 240

Query: 241 E 241
           +
Sbjct: 241 Q 241


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.132    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 465,649
Number of extensions: 19236
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 162
Effective length of database: 740,042
Effective search space: 119886804
Effective search space used: 119886804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 127 (53.5 bits)