BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3460.p
         (553 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093820|ref|YP_001098895.1| hypothetical protein HEAR0562 [...   731   0.0  

>gi|134093820|ref|YP_001098895.1| hypothetical protein HEAR0562
           [Herminiimonas arsenicoxydans]
          Length = 502

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/430 (81%), Positives = 387/430 (90%)

Query: 1   MINPLPIASHPGGLLCLLPQLANRHGCITGATGTGKTVTLQVLAQALSDIGVPVFMADVK 60
           M NPL IA +    L LLP+LANRHGCITGATGTGKTVTLQ  AQALS+IGVPVFMADVK
Sbjct: 1   MPNPLLIAKNKDHELSLLPELANRHGCITGATGTGKTVTLQTFAQALSNIGVPVFMADVK 60

Query: 61  GDLSGLGKAGSASPKTTARLAQLGLPEPAWAAAPVAFWDVYGQQGHPVRATISDMGPLML 120
           GDLSG+ K G+ + K   R   LG+ EP WA APV FWDVYG +GHPVRATISD+GPL+L
Sbjct: 61  GDLSGIAKPGTFTGKVKERYTTLGVDEPVWAGAPVTFWDVYGVKGHPVRATISDLGPLLL 120

Query: 121 ARMLNLNDTQQGVLQLVFKIADDHGLLLLDTKDLRAMLQHVGENAAQFKTEYGNISAASV 180
           ARMLNLNDTQQGVLQLVFKIADD+ LLLLDTKDLRAMLQHVG+NAA F+TEYGNISAAS+
Sbjct: 121 ARMLNLNDTQQGVLQLVFKIADDNRLLLLDTKDLRAMLQHVGDNAATFQTEYGNISAASI 180

Query: 181 GAIQRGLIAIDEQGGDRFFGEPMLNIEDWMQTDAQGRGVINILAADRLMNAPRLYSTFLL 240
           GAIQRGLI ++EQGGD+FFGEPMLNIED MQTDA+G+GVINILAAD+LMNAPRLYSTFLL
Sbjct: 181 GAIQRGLIGVEEQGGDQFFGEPMLNIEDLMQTDAKGKGVINILAADKLMNAPRLYSTFLL 240

Query: 241 WMLSELFEHLPEVGDLDKPKMAFFFDEAHLLFDEAPKPLLQKIEQVVRLIRSKGVGIYFV 300
           WMLSELFEHLPEVGDLDKPK+AFFFDEAHLLF EAPKPLLQKIEQVVRLIRSKGVG+YFV
Sbjct: 241 WMLSELFEHLPEVGDLDKPKLAFFFDEAHLLFAEAPKPLLQKIEQVVRLIRSKGVGVYFV 300

Query: 301 TQNPLDIPDTVLGQLGNRVQHALRAYTPRDQKAVQAAAETFRPNPMVNTAQAITELGVGE 360
           TQNPLDIPDTVLGQLGNRVQHALRAYTPRDQKAVQAAAETFRPNP +N  Q ITELGVGE
Sbjct: 301 TQNPLDIPDTVLGQLGNRVQHALRAYTPRDQKAVQAAAETFRPNPALNIVQVITELGVGE 360

Query: 361 ALVSFLDDKGRPNMVERGYVLTPASQIGPLSAEERRALIASSLVAGVYEQAIDRESAYER 420
           ALVSFLD+KGRPN+VERG+VL PASQIGP++  ER AL+ +S+VAGVYE+ +DRESAYE+
Sbjct: 361 ALVSFLDEKGRPNIVERGFVLPPASQIGPITDAERAALMVNSMVAGVYEKTVDRESAYEK 420

Query: 421 LKGRAVQQPQ 430
           +KGR  +Q Q
Sbjct: 421 IKGRVEKQTQ 430



 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 49/64 (76%), Gaps = 10/64 (15%)

Query: 496 GGGLGDLLKDAAGGLFGNGN------RRSDSPLQAMVKSAARSIGSQVGRELIRGVLGSL 549
           GGG  D+L    GG+FGNGN      RRSD+ ++AM+KSA R++GS VGRE+IRGVLGS+
Sbjct: 443 GGGFSDVL----GGIFGNGNGKKTAGRRSDTVVEAMMKSAVRTMGSTVGREIIRGVLGSI 498

Query: 550 MKKR 553
           MK++
Sbjct: 499 MKRK 502


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 999,514
Number of extensions: 40924
Number of successful extensions: 188
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 2
Length of query: 553
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 467
Effective length of database: 716,977
Effective search space: 334828259
Effective search space used: 334828259
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)