BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3459.p
         (304 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093824|ref|YP_001098899.1| putative efflux transporter [He...   385   e-108

>gi|134093824|ref|YP_001098899.1| putative efflux transporter
           [Herminiimonas arsenicoxydans]
          Length = 306

 Score =  385 bits (988), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/296 (65%), Positives = 236/296 (79%), Gaps = 1/296 (0%)

Query: 8   STPRQAFLGGLLLAIVGAIFFSAKAIVAKLMYRYQVDAVMVITLRMVFSFPMFAAVAIWK 67
           S  R+ FL GLL+ I GA+ FS KAIVAKL+YRY VDAV +I  RM+FS P F  + IWK
Sbjct: 11  SAARKLFLIGLLIGIAGAVLFSTKAIVAKLIYRYDVDAVTLIAFRMMFSLPFFIVIGIWK 70

Query: 68  ARTQPPLARADYLRILVLGLMGYYLSSFLDFLGLQYISAGLERLILFLTPSFVMLIAFFF 127
           +R    L+  +  +I++LGL+GYYLSSFLDFLGLQYISAGLERLILFLTPSFV+LI+ F 
Sbjct: 71  SRNATSLSGKEKWQIVLLGLIGYYLSSFLDFLGLQYISAGLERLILFLTPSFVLLISVFL 130

Query: 128 FKRKVGAIEWGALLVSYFGTVLVLQHDLHTGGSEVILGSALVLGSALSYSIYLIGSGELV 187
            K+K+  IEW AL  SY GT+LV  HD+  GG+ V+LGS LVL SA+SY+IYL+G+GELV
Sbjct: 131 MKKKISVIEWAALGTSYLGTILVFMHDVRIGGNGVVLGSVLVLCSAVSYAIYLVGTGELV 190

Query: 188 RRVGAVRLVAYAMCVSSVACVIQFFILRPPAELLTQVAPVYQLSLFNAVFCTVLPVFLTM 247
           RRVGA+RLVAYAMCVSSVAC+ QFF+LR P  +L Q   VY LS+ NA FCTVLPVFLTM
Sbjct: 191 RRVGALRLVAYAMCVSSVACIGQFFLLR-PTSMLIQPMAVYNLSMINAFFCTVLPVFLTM 249

Query: 248 VAVARIGAPTAAQAGLVGPVSTLFMGAVLLDEPITAIQLLGTALVLAGMWLLSRKK 303
           +AV RIGA TA+QAG++GPVSTLF+ A +L EPIT IQL GTALVL G++LLS+K+
Sbjct: 250 IAVDRIGAATASQAGMIGPVSTLFLAAWILGEPITGIQLAGTALVLCGIYLLSKKR 305


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.331    0.143    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 471,128
Number of extensions: 17261
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 223
Effective length of database: 733,452
Effective search space: 163559796
Effective search space used: 163559796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 128 (53.9 bits)