BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3458.p
         (324 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093826|ref|YP_001098901.1| quinone oxidoreductase, NADPH-d...   478   e-136
gi|134093618|ref|YP_001098693.1| putative oxidoreductase [Hermin...   134   5e-33

>gi|134093826|ref|YP_001098901.1| quinone oxidoreductase,
           NADPH-dependent [Herminiimonas arsenicoxydans]
          Length = 324

 Score =  478 bits (1229), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 230/324 (70%), Positives = 264/324 (81%)

Query: 1   MAKAIRMNKTGGPEVMEYVDVEVGEPGAGQVRIRHAAIGLNFIDCYFRAGLYPQPLPAGL 60
           M KAIR+NKTGGPEVMEY+DVE+   G G+  I   A GLN+ID YFR GLYPQ LPAGL
Sbjct: 1   MTKAIRINKTGGPEVMEYLDVELAAAGPGEALIHQMACGLNYIDVYFRTGLYPQTLPAGL 60

Query: 61  GQEGAGTIEAVGPGVSDFKVGDRVAYAGRPNGAYAEERVMPADILVKLPDAISFDTAAAM 120
           G EGAG + AVG GV+  K GDRVAYAG P GAYAE RV+PA +LVKLP +I F+T AAM
Sbjct: 61  GMEGAGVVAAVGEGVTHVKPGDRVAYAGGPPGAYAESRVLPAKVLVKLPASIDFETGAAM 120

Query: 121 MLQGMTVQYLLRQTYVVQPGETILFHAAAGGIGLIACQWARALGVNLIGTVSSEEKAALA 180
           MLQG+T QYLLR+T+ +Q GETILFHAAAGG+GLIACQWARALGV +IGTV S+EKAALA
Sbjct: 121 MLQGLTAQYLLRRTFRLQGGETILFHAAAGGVGLIACQWARALGVTMIGTVGSDEKAALA 180

Query: 181 KQHGAAHVINYKAENFVERVKEITGGKGVPVVYDSIGKDTFMGSLDCLRPRGMMVSFGNA 240
           K HG  H INY  ENFVERVKEIT G GVPVVYDSIGKDTF+GSLDCL P GM+VS+GNA
Sbjct: 181 KAHGCTHTINYNTENFVERVKEITHGAGVPVVYDSIGKDTFIGSLDCLSPMGMLVSYGNA 240

Query: 241 SGPVAPFGVSELAARGSLFLTRPSLGNYIATRAELDATAGDLFHMVQSKQISIEINQRYA 300
           SGPV PF ++ELA+RGSLF+TRPS+  Y A R +L+  + +LF M++S +I + INQRYA
Sbjct: 241 SGPVPPFSLTELASRGSLFVTRPSIFTYTAKRDDLEQMSAELFGMIESGKIKLSINQRYA 300

Query: 301 LKDVGQAHADLEGRKTTGSTILIP 324
           LKDV QAH DLE RKTTGSTILIP
Sbjct: 301 LKDVAQAHIDLESRKTTGSTILIP 324


>gi|134093618|ref|YP_001098693.1| putative oxidoreductase
           [Herminiimonas arsenicoxydans]
          Length = 325

 Score =  134 bits (338), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 107/330 (32%), Positives = 160/330 (48%), Gaps = 18/330 (5%)

Query: 3   KAIRMNKTGGPEVMEYVDVEVGEPGAGQVRIRHAAIGLNFIDCYFRAGLYPQPLPAG--L 60
           +AI + + G P+V++  +  + EP AG++ I+  A G+N  D + R G Y  P  A    
Sbjct: 2   RAIEITQPGPPDVLKLCERPMPEPKAGELLIKVHAAGINRPDVWQRLGSYAVPKGASDIP 61

Query: 61  GQEGAGTIEAVGPGVSD--FKVGDRVAYAGRPNGAYAEERVMPADILVKLPDAISFDTAA 118
           G E AG  E VG  ++D  FK+GD V    +  G YAE    P +  + +P  +    AA
Sbjct: 62  GLEIAG--EVVGGDLADSGFKIGDMVCALAQ-GGGYAEYCTAPVEQCLPIPKGLDVVEAA 118

Query: 119 AMMLQGMTVQYLLRQTYVVQPGETILFHAAAGGIGLIACQWARALGVNLIGTVSSEEKAA 178
           ++     TV   +     +   ET+L      GIG+ A Q A ALG  +  T  S+EK  
Sbjct: 119 SLPETFFTVWSNVFDRVGLTGNETLLVQGGTSGIGVTAIQIATALGHRVFATAGSDEKCR 178

Query: 179 LAKQHGAAHVINYKAENFVERVKEITGGKGVPVVYDSIGKDTFMGSLDCLRPRGMMVSFG 238
             +  GA   INYK E+FVE VK  T GKGV V+ D IG D     ++CL   G +V   
Sbjct: 179 ACEVLGAERGINYKTEDFVEVVKAATNGKGVDVILDIIGGDYVAREINCLADDGRLVFIA 238

Query: 239 NASGPVAPFGVSELAAR-----GSLFLTRPSLGNYIATRAEL-DATAGDLFHMVQSKQIS 292
            A G  A   + ++  R     GS    RP     +A +A + D     ++ ++++ +I 
Sbjct: 239 LAGGNKATLSLGQVMMRRLTITGSTLRARP-----VAFKAAIADQLRTKVWPLIEAGKIK 293

Query: 293 IEINQRYALKDVGQAHADLEGRKTTGSTIL 322
             + Q +AL+D  QAHA +E     G  +L
Sbjct: 294 PVVYQTFALEDAAQAHALMESSTHIGKIVL 323


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.137    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 655,765
Number of extensions: 29356
Number of successful extensions: 102
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 2
Length of query: 324
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 242
Effective length of database: 730,157
Effective search space: 176697994
Effective search space used: 176697994
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)