BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3456.p
         (217 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093827|ref|YP_001098902.1| putative lipoprotein [Herminiim...   170   5e-44

>gi|134093827|ref|YP_001098902.1| putative lipoprotein
           [Herminiimonas arsenicoxydans]
          Length = 210

 Score =  170 bits (430), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 95/217 (43%), Positives = 135/217 (62%), Gaps = 12/217 (5%)

Query: 1   MKRWLYLFLAAASLLLSGCASVIQSNVTSYHAWSPGDNAKPFTFAATKEQENDLQHQNYA 60
           M+R L++F+A AS+LLSGCAS I+S+V ++H W      K + F    EQ NDL++++Y 
Sbjct: 1   MRRCLWIFIAVASVLLSGCASFIKSDVVAFHEWPADLQNKTYIFDRKTEQANDLEYRSYE 60

Query: 61  SLIRQELLFLGFTEAGEGKPAQLQVSFSYGMNTEQVVVSRPAY-DPFFYGPGPGWGRFGP 119
           +L+R EL  LGF EA + + A L+V+  Y ++   V    P   DP++YG      R+  
Sbjct: 61  NLVRTELGRLGFAEAQDPRGANLKVALQYRIDARDVTAMEPVLVDPYWYGYPYYGPRWR- 119

Query: 120 RPFGFYGPYGPFYDPFWYGGPM---ETTSYPVFLRRLQIGISRLADGKKLFDVVVDSEGQ 176
                 G YGP+YDPFWY GP+       Y VF R+L I I+R  DGKKL+DV V+S+G 
Sbjct: 120 ------GYYGPYYDPFWYPGPVTQYREVQYQVFQRQLNILITRSKDGKKLYDVTVNSDGN 173

Query: 177 RAGLAAAMPAMVRAAFEDFPGPSGVTRHISIKV-DKD 212
              +A AMP MVR+AF DFPG SGV   +++++ DK+
Sbjct: 174 NGSMAFAMPYMVRSAFSDFPGRSGVPHRVNLEIKDKE 210


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.139    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 276,177
Number of extensions: 7636
Number of successful extensions: 28
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 139
Effective length of database: 743,337
Effective search space: 103323843
Effective search space used: 103323843
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)