BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3454.p
         (333 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093829|ref|YP_001098904.1| fructose-bisphosphatase [Hermin...   616   e-178

>gi|134093829|ref|YP_001098904.1| fructose-bisphosphatase
           [Herminiimonas arsenicoxydans]
          Length = 334

 Score =  616 bits (1588), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 292/332 (87%), Positives = 311/332 (93%)

Query: 1   MKRISLTQHLIEQQRLHNKIPSELRLLIEVVGRACKSISHAVGKGALGEVLGSAGSENVQ 60
           MKRISLTQ+LIE+QRLHN IP+ELRLLIEVV RACK+ISHAVGKGALGEVLGSA SENVQ
Sbjct: 1   MKRISLTQYLIEEQRLHNNIPAELRLLIEVVARACKTISHAVGKGALGEVLGSAQSENVQ 60

Query: 61  GEVQKKLDVISNEILLEANEWGGHLAAMASEEMETIHRIPNRYPKGEYLLMFDPLDGSSN 120
           GEVQKKLD+ISN+ILLEANEWGGHLAAMASEEMETIH IPNRYP GEYLL+FDPLDGSSN
Sbjct: 61  GEVQKKLDIISNDILLEANEWGGHLAAMASEEMETIHPIPNRYPMGEYLLLFDPLDGSSN 120

Query: 121 IDVNVSIGTIFSVLKAPEGMTEPSEQDFMQPGTKQVAAGYAVYGPQTVLVLTTGDGVHCF 180
           IDVNVSIGTIFSVLKA +GM    E DF+Q G+KQV AGYAVYGPQTVLVLTTG+GV CF
Sbjct: 121 IDVNVSIGTIFSVLKAADGMQAAKEADFLQAGSKQVVAGYAVYGPQTVLVLTTGNGVQCF 180

Query: 181 TLDREMGAWVLTQKDIKIPEDTKEFAINASNQRHWFPPVKRYVDEMLAGVTGPLGKDFNM 240
           TLDREMG+WV+TQK+++IP DTKEFAINASN RHW+PPVKRYVDEMLAG TGP GKDFNM
Sbjct: 181 TLDREMGSWVMTQKNMQIPADTKEFAINASNARHWYPPVKRYVDEMLAGTTGPRGKDFNM 240

Query: 241 RWIASMVADVHRILNRGGIFMYPADAREPGKPGKLRLMYEANPMAFIVEQAGGAATDGQQ 300
           RWIASMVADVHRILNRGGIFMYPADAREP KPGKLRLMYEANPMAF+VEQAGGAATDGQQ
Sbjct: 241 RWIASMVADVHRILNRGGIFMYPADAREPDKPGKLRLMYEANPMAFLVEQAGGAATDGQQ 300

Query: 301 RILDIQPEKLHQRVAVFLGSKNEVDRVTSYHQ 332
           RILDIQPEKLHQRV VFLGSKNEVD VTSYH+
Sbjct: 301 RILDIQPEKLHQRVPVFLGSKNEVDLVTSYHK 332


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 651,756
Number of extensions: 27135
Number of successful extensions: 66
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 251
Effective length of database: 730,157
Effective search space: 183269407
Effective search space used: 183269407
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)