BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3453.p (518 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094940|ref|YP_001100015.1| GGDEF domain-containing protein... 347 8e-97 gi|134095859|ref|YP_001100934.1| hypothetical protein HEAR2691 [... 152 4e-38 gi|134094022|ref|YP_001099097.1| hypothetical protein HEAR0777 [... 137 1e-33 gi|134095595|ref|YP_001100670.1| hypothetical protein HEAR2418 [... 134 1e-32 gi|134093839|ref|YP_001098914.1| hypothetical protein HEAR0586 [... 120 2e-28 >gi|134094940|ref|YP_001100015.1| GGDEF domain-containing protein [Herminiimonas arsenicoxydans] Length = 519 Score = 347 bits (890), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 191/488 (39%), Positives = 281/488 (57%), Gaps = 4/488 (0%) Query: 22 LFIILICMAIAASHVWQSVTARMAQVNNTRIYSGNIARTLAHQAYDVFQATHGALINISD 81 +F+ ++ + I A + W AR ++ T + N+A+ LA A D L+++ + Sbjct: 25 VFVTVLLVCILALNAWH---ARAEKIRETETATSNMAKALAQHAEDTVGGIDNLLVSMEE 81 Query: 82 RINEVGIGSPHTTAMGPLLRRMASEMPQLDGLYVFDANGNRIASSSPPSPRDANNADRAY 141 + M LR+ +++P L GL+V+D +G +A+S D NNADR Y Sbjct: 82 MLERDSWNPLQLERMNQFLRQRVTDLPLLHGLFVYDEHGQWVANSQETLRTDLNNADREY 141 Query: 142 FHYHRDHQDDQPHISATIISRSTTQWVIPMSLRLNHPDGRFAGVLLATLRLEHFNTLYQT 201 F +HR H D PH+ I SRST W+I +S RL H DG FAGV+LAT+ +++F+ Y+ Sbjct: 142 FIFHRTHTDSGPHLGPPIRSRSTGDWIITVSRRLEHADGNFAGVVLATINMQYFSAYYKD 201 Query: 202 VDLGHNSSILLVLRPGIILTRQPFEPDYINRDLSQDPNLHELLTGQSSGHAEIVSPLDAS 261 D+G +I+L G +L R+PF+ I D+S P SSG A + + +D + Sbjct: 202 FDIGKAGAIVLTTDSGTLLVRRPFDEAVIGGDISNGPVYQFYKRQGSSGTAILTANIDRT 261 Query: 262 YRYLTYQAVQDFPLMVAVTIARDEALAIWRQQTVVYGAAVLLLLIIIAIFGVRLIGLINL 321 R +Y+ + +PL++AV + DE L WR T+ + ++L+++ + G RL+ I + Sbjct: 262 ERIYSYRHLDRYPLLIAVAQSTDEVLESWRNSTMRFAFFSAMVLLLLWLLGARLVHQITV 321 Query: 322 RLAAEDRALQVMGELHQANQQLELLAHQDGLTGLANRRHLDTVLAAEWRRALRSNAVLSL 381 R A+ +L ++N +L LA D LTGLANRR D L E+ RA+R+ L+L Sbjct: 322 RERAQSELRTARDDLERSNGELAALALLDSLTGLANRRRFDAALDDEFARAMRNQTSLAL 381 Query: 382 IMIDVDFFKQYNDLYGHQAGDECLRRIAAVLKERQRRPGDLAARYGGEEMVMLLPDTDAA 441 IM+DVD FK+YND YGH GDECL+ I+ +LK R GDL ARYGGEE V+LLP TD A Sbjct: 382 IMLDVDHFKKYNDRYGHPQGDECLKEISKILKTATARTGDLVARYGGEEFVILLPGTDRA 441 Query: 442 GAMQVAEKIRAGIQALDLPHRGNPAGVVTISAGVGALELLGPGARTLEDLLGQADIALYQ 501 GA VAE++R IQAL++ H P G+VT S G+ AL + + + L+ AD ALY+ Sbjct: 442 GAAAVAERVRLAIQALNMEHAETPDGIVTASLGIAAL-IPQRQQNSPQQLVHAADQALYK 500 Query: 502 AKHGGRNQ 509 AK GRNQ Sbjct: 501 AKEDGRNQ 508 >gi|134095859|ref|YP_001100934.1| hypothetical protein HEAR2691 [Herminiimonas arsenicoxydans] Length = 280 Score = 152 bits (384), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 74/171 (43%), Positives = 110/171 (64%), Gaps = 3/171 (1%) Query: 341 QQLELLAHQDGLTGLANRRHLDTVLAAEWRRALRSNAVLSLIMIDVDFFKQYNDLYGHQA 400 ++LE L+ +DGLTG+ANRR D+++AAEW A ++ LS+IM+D+D+FKQYND YGH Sbjct: 108 KELETLSFKDGLTGVANRRMFDSIMAAEWANAKLNHQPLSVIMLDIDYFKQYNDHYGHIQ 167 Query: 401 GDECLRRIAAVLKERQRRPGDLAARYGGEEMVMLLPDTDAAGAMQVAEKIRAGIQALDLP 460 GD+CL+R+A +L RR D AR+GGEE +++LP+TD A+ +AE+ R I +P Sbjct: 168 GDDCLKRVANILSSATRRSRDFFARFGGEEFILVLPETDELNAINIAERCRTLICKEKIP 227 Query: 461 HRGNPA-GVVTISAGVGALELLGPGARTLEDLLGQADIALYQAKHGGRNQV 510 H + ++T+S GVG ++ + + D LYQAK GRN + Sbjct: 228 HEKSEVIPMITVSLGVGT--VIPTDKDDPIRFIEEVDKRLYQAKQRGRNCI 276 >gi|134094022|ref|YP_001099097.1| hypothetical protein HEAR0777 [Herminiimonas arsenicoxydans] Length = 568 Score = 137 bits (345), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 78/182 (42%), Positives = 108/182 (59%), Gaps = 18/182 (9%) Query: 334 GELHQANQQLELLAHQDGLTGLANRRHLDTVLAAEWRRALRSNAVLSLIMIDVDFFKQYN 393 EL + N LE LA D LTGLANR H + LA E+ R RS ++M+DVDFFK+ N Sbjct: 389 AELQELNITLEQLARTDALTGLANRMHTNERLAEEFARFKRSKIPYCILMLDVDFFKRVN 448 Query: 394 DLYGHQAGDECLRRIAAVLKERQRRPGDLAARYGGEEMVMLLPDTDAAGAMQVAEKIRAG 453 D+YGH GDE L+ +A++L R+ D R+GGEE + +LP TD++ AM VAEKIR Sbjct: 449 DIYGHGVGDEVLKHVASILSATVRKT-DFVGRHGGEEFLSILPMTDSSAAMVVAEKIRNT 507 Query: 454 IQALDLPHRGNPAGVVTISAGVGALELLGPGARTLEDL-----LGQADIALYQAKHGGRN 508 I++ + P G +T+S GV + T+ D+ + +AD +YQAK GRN Sbjct: 508 IESTPI----GPVGNLTVSIGVQEV--------TVNDINEDVAVTRADECMYQAKKSGRN 555 Query: 509 QV 510 +V Sbjct: 556 KV 557 >gi|134095595|ref|YP_001100670.1| hypothetical protein HEAR2418 [Herminiimonas arsenicoxydans] Length = 313 Score = 134 bits (337), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 74/193 (38%), Positives = 112/193 (58%), Gaps = 4/193 (2%) Query: 319 INLRLAAEDRALQVMGELHQANQQLELLAHQDGLTGLANRRHLDTVLAAEWRRALRSNAV 378 + R+ E R + L + + LE L D LTG+ +R++ + L W + + + Sbjct: 119 VTARVVLEQRLRKERRLLERDKENLEQLVVHDTLTGIYSRKYFEDQLRTRWDQLIDTQES 178 Query: 379 LSLIMIDVDFFKQYNDLYGHQAGDECLRRIAAVLKERQRRPGDLAARYGGEEMVMLLPDT 438 L ++ IDVD+FK +ND YGH AGD+ LR++A++L + RR + AR+GGEE ++L + Sbjct: 179 LVMMFIDVDYFKGFNDTYGHIAGDDALRKVASILDDSLRRDSEFVARFGGEEFIVLATEM 238 Query: 439 DAAGAMQVAEKIRAGIQALDLPHRGNPAGVVTISAGVGALELLGPGARTL-EDLLGQADI 497 A A+ AE + ++ LD+PH +P +TIS GV ++ P + E LL QAD Sbjct: 239 TAEQAIMHAENLCRSVRDLDIPHAASPHQFLTISCGVVRMK---PSSMAQPEVLLEQADS 295 Query: 498 ALYQAKHGGRNQV 510 ALYQAK GRNQV Sbjct: 296 ALYQAKARGRNQV 308 >gi|134093839|ref|YP_001098914.1| hypothetical protein HEAR0586 [Herminiimonas arsenicoxydans] Length = 322 Score = 120 bits (301), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/204 (40%), Positives = 112/204 (54%), Gaps = 23/204 (11%) Query: 315 LIGLINLRLAAEDRALQVMGELHQANQQLELLAHQDGLTGLANRRHLDTVLAAEWRRALR 374 L+ ++ RL A + L+ ++ + +QL +L DGLTGL NR L+ LA A Sbjct: 132 LLRQLSFRLRAANAQLRRREKVGEFYRQLSML---DGLTGLYNRAWLNDKLAELVEEAHH 188 Query: 375 SNAVLSLIMIDVDFFKQYNDLYGHQAGDECLRRIAAVLKERQRRPGDLAARYGGEEMVML 434 + LSLIMID+D+FK++ND YGHQ GD LR A VL RP D A RYGGEE+ ++ Sbjct: 189 AGRPLSLIMIDLDYFKKFNDQYGHQMGDHALRVAAGVLNA-ALRPSDFAVRYGGEELTVI 247 Query: 435 LPDTDAAGAMQVA----EKIRAGIQALD----LPHRGNPAGVVTISAGVGALELLGPGAR 486 LPD++A VA E++R + D LPH G+ T+ A Sbjct: 248 LPDSNATTGRMVAQRLCERMREAVVFEDMHVPLPHLTASFGIATLDA-----------QH 296 Query: 487 TLEDLLGQADIALYQAKHGGRNQV 510 EDL+ +AD ALY+AK GRNQ+ Sbjct: 297 DQEDLVTRADAALYRAKEAGRNQI 320 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.136 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 975,020 Number of extensions: 40441 Number of successful extensions: 230 Number of sequences better than 1.0e-08: 29 Number of HSP's gapped: 181 Number of HSP's successfully gapped: 30 Length of query: 518 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 432 Effective length of database: 716,977 Effective search space: 309734064 Effective search space used: 309734064 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)