BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3452.p
         (301 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095669|ref|YP_001100744.1| putative chloramphenicol-sensit...   155   2e-39
gi|134096459|ref|YP_001101534.1| chloramphenicol resistance prot...    71   9e-14

>gi|134095669|ref|YP_001100744.1| putative chloramphenicol-sensitive
           protein [Herminiimonas arsenicoxydans]
          Length = 294

 Score =  155 bits (392), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 127/292 (43%), Positives = 179/292 (61%), Gaps = 7/292 (2%)

Query: 6   IGRGIGLSVLASSLFAFLSGYTRLLAPLDGTEIFAWRIVITLLCVLGLLAWR-GDLPRLR 64
           + +GI  SVL+S+LFA L  Y+ LL PLDG EIF WR ++T    L +  W  G    + 
Sbjct: 1   MSKGIAFSVLSSTLFAVLYFYSTLLTPLDGEEIFGWRTLLTF-PFLTIFIWACGRQQLIH 59

Query: 65  SAMAELLGSPARIALLLLMTALLALQQWLFLWGSVNGRALEVSLGYFLLPLSMVLVGRFH 124
           + +  +   P  +   L   ALL +Q WLF+W  ++GRAL VSLGYFLLPL+M+L GR  
Sbjct: 60  TLLQRIRRQPLLLVGALASAALLGIQLWLFMWAPLHGRALHVSLGYFLLPLTMLLTGRIV 119

Query: 125 YGEKMDLLQGLAVLCACVGVAHELWMTRAFSWPTLAVALGYPPYFILRRRIRIDSLLIFA 184
           Y +++   Q LA   A  GVA+EL+   +FSW TL VA GYP YFILRRR+  ++L    
Sbjct: 120 YQDRLSRPQKLAAFFAMGGVANELFQVGSFSWETLVVAFGYPLYFILRRRMGANNLGGLW 179

Query: 185 VELMVLALPSLLAL--ATSPRTVATLHTPAMWLLLPGLGVLSMIALTSYLRAGKLLPMGL 242
           ++ M L LP+ +    A      A    P ++LL+P LGVLS  AL  Y+ A ++L + L
Sbjct: 180 LD-MALLLPAGVWFIHAGDVGFTALGEYPLLYLLIPLLGVLSACALIFYMVASQMLSLSL 238

Query: 243 FGILGYVEPVLLVLVAMAVLGETLHLAQLGTYVPIWLSV-LLTALHSVKLMR 293
           FG+LGYVEPV L+++   +LGE++   +  TY+PIW++V LL A  +V L +
Sbjct: 239 FGLLGYVEPV-LLVLVALLLGESIKAHEWLTYIPIWIAVSLLVAEGAVTLCK 289


>gi|134096459|ref|YP_001101534.1| chloramphenicol resistance protein
           [Herminiimonas arsenicoxydans]
          Length = 294

 Score = 70.9 bits (172), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 107/212 (50%), Gaps = 9/212 (4%)

Query: 84  TALLALQQW-LFLWGSVNGRALEVSLGYFLLPLSMVLVGRFHYGEKMDLLQGLAVLCACV 142
           +ALL    W L++W     R ++ SLGYF+ PL  VL+G     E++ +LQ +AV  A +
Sbjct: 74  SALLLSSNWFLYIWAVNQDRVVDASLGYFMTPLVNVLLGSVILKERLRILQWVAVGIAAL 133

Query: 143 GVAHELWMTRAFSWPTLAVALGYPPYFILRRRIRIDSLLIFAVELMV---LALPSLLALA 199
           GV    W      W +L + + +  Y +LR+   + +L   ++E M+   LA+ SLL + 
Sbjct: 134 GVLWLTWQNGHPPWISLMIGITFGMYGLLRKTASLGTLEGLSLETMLLFPLAVISLLFMT 193

Query: 200 TS-PRTVATLHTPAMWLLLPGLGVLSMIALTSYLRAGKLLPMGLFGILGYVEPVLLVLVA 258
           +          T   WL++   G ++ I L  +  A +L+P+   G++ Y+ P L +L  
Sbjct: 194 SQGAHGFVDASTTTKWLMIAS-GPITAIPLLMFAAAARLVPLSTMGLMQYITPSLQLLAG 252

Query: 259 MAVLGETLHLAQLGTYVPIWLSVLLTALHSVK 290
           + +  E    A+L  +  IW+++   A +S+ 
Sbjct: 253 IWLYHEPFGGARLIGFAAIWIAL---AFYSID 281


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.330    0.143    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 481,292
Number of extensions: 16085
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 2
Length of query: 301
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 220
Effective length of database: 733,452
Effective search space: 161359440
Effective search space used: 161359440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)