BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3449.p (646 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 334 9e-93 gi|134093834|ref|YP_001098909.1| putative methyl-accepting chemo... 328 3e-91 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 324 8e-90 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 318 6e-88 gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 317 1e-87 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 334 bits (856), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 212/418 (50%), Positives = 278/418 (66%), Gaps = 16/418 (3%) Query: 229 SLSMAAGKHALPATVEAARVAAVADADEAFKLAE-------NAIVRADQLTMPAPQWVAT 281 +L ++A L ATV R A D+ L E NAI A+++ A ++ + Sbjct: 103 TLVVSAEGKKLLATVAEKRATYTAIRDDVMNLREARGAELQNAI--ANKMKPAADAYIQS 160 Query: 282 MTRIIDTQFVLVNASFEMMRDELQAKIPRLRNELIVLCLALAALALAALWVMVAITRATT 341 + +++ Q +FE + + R LIVL L L + W++ TR+ T Sbjct: 161 VEAVVNAQI----NNFEDAKGRVDTIYQSARMLLIVLGLVALTLGIVLAWML---TRSIT 213 Query: 342 AAIADAVRLTEAVSAGDLTQHVEVKGSDEVARLLTAMQTMTAQLSKVVGSVRSNSESVAT 401 + AV + V++GDLT + V DE +LL A++ M L+ + VRS +++AT Sbjct: 214 KPLDYAVSVARLVASGDLTGRITVDSKDETGQLLQALKDMNDSLTASITQVRSGVDTIAT 273 Query: 402 ASAQIAQGNADLSKRTEEQASALQQTAASMEELGSTVQQNADGARQAGQLAREAADIASQ 461 AS QIA GN DLS RTEEQAS+L++TA+SMEEL STV+QNAD ARQA QLA A+ +A + Sbjct: 274 ASNQIASGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVTASGVAEK 333 Query: 462 GGAVVQQVVQTMQGIHASSDRISDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 521 GG VV +VV TM GI+ S+ +I DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV Sbjct: 334 GGTVVSKVVDTMDGINTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 393 Query: 522 ATEVRSLAQRSATAAREIKELITASVDQVGQGTQLADQAGKTMEEIVSSIRRVSDIMVGI 581 A+EVRSLAQRSA AA+EIK LI SVD+V G++L +AG TM E+V S++RV+DIM I Sbjct: 394 ASEVRSLAQRSAAAAKEIKTLIDDSVDKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEI 453 Query: 582 NAATAEQNTGIAQVGQAVTQMDSTTQQNAALVEQSAAAAISLSGQARELVQAVAVFRV 639 AA+ EQ+ GI QV QA+ QMD TQQNAALVE++AAAA SL+ QA L QAV++F++ Sbjct: 454 MAASQEQSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAANLAQAVSIFKL 511 >gi|134093834|ref|YP_001098909.1| putative methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 700 Score = 328 bits (842), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 259/658 (39%), Positives = 378/658 (57%), Gaps = 51/658 (7%) Query: 8 LKFSRKFVLIGALAFMLFIVPTTLLVRGNL----QDLAVAQREELAIQPGRDLLLLLKQM 63 L+ KF+++ ++F+ P L L + +A ++E L IQ R + +++ Sbjct: 21 LRLLPKFIVLT----LIFMTPLVLATLLLLGELDKSIAFTKQERLGIQHVRKVQEIIRLT 76 Query: 64 QQHRGLSALYLADGDGAAASRAER-QKEVE---ATLERVRTGLLPLQDKDLIDTLDRLAT 119 QQHR +++ G+ +A +A+ QK + A + +R L D + + Sbjct: 77 QQHRSYQHMFIM-GNASAEQQAQGLQKNINEQIALFDAMRKEEPALYAGDAWTAIQK--- 132 Query: 120 DWRALAQSIAAKSITGAQSNQQHAQLIA---RELLLLDDLTNSSGLALESEAALFYVQRA 176 +W AL + +A ++ ++ + +LIA R ++ D TN L + E A +Y+ Sbjct: 133 NWTALQEKLA--TVKDRKTYNEQTELIAQLARFNTMIADRTN---LTHDPETASYYLAEL 187 Query: 177 VMSELPQLTEALGQARARGAVILGRGQADAEERARLESLADRARRSYENARRSLSMAAGK 236 + + PQ+TE L + RGA + G +A E L S + +R LS GK Sbjct: 188 FIGDFPQITEGLSEVAGRGAAYIDSGLMEANEEVLLGS-------TVLLTQRDLSGIPGK 240 Query: 237 -----HALPATVE--AARVAAVADADEAFKLAENAIVRA-DQLTMPAPQWVATMTRIIDT 288 H PA + +AAV A A+N ++ + DQ + Q+ ID Sbjct: 241 IETLLHHSPALKPQMTSVLAAVPLAVGYLDRAKNEVLSSVDQTS--GNQFAEAGNAAIDG 298 Query: 289 QFVLVNASFEMMRDELQAKIPR--LRNELIVLCLALAALALAALWVMVAITRATTAAIAD 346 + S ++ L A++ +I+L + L +A+AA +++ +T + Sbjct: 299 LYAAAATSANLLDQLLLARMESDAFHRSMIMLAICLT-MAIAAYFLLGFYVSFST----E 353 Query: 347 AVRLTEAV---SAGDLTQHVEVKGSDEVARLLTAMQTMTAQLSKVVGSVRSNSESVATAS 403 RL AV ++GDL++ + G DE+A+LL A M+ L+++V VR S+++A AS Sbjct: 354 VRRLGAAVMRTASGDLSRKITSGGKDEIAQLLNAFGNMSDGLTRLVTQVRLGSDTIAQAS 413 Query: 404 AQIAQGNADLSKRTEEQASALQQTAASMEELGSTVQQNADGARQAGQLAREAADIASQGG 463 +IA GN +LS RTEEQAS+L+QT+A+MEEL STV+QNA A+QA +LA+ A+ IA QGG Sbjct: 414 NEIATGNLNLSTRTEEQASSLEQTSAAMEELTSTVKQNAAHAQQANRLAKTASGIAEQGG 473 Query: 464 AVVQQVVQTMQGIHASSDRISDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAT 523 + V QVV TMQ I SS ISDIIGV+D IAFQTNILALNAAVEAARAGEQGRGFAVVA Sbjct: 474 SAVSQVVDTMQAIQQSSREISDIIGVVDSIAFQTNILALNAAVEAARAGEQGRGFAVVAA 533 Query: 524 EVRSLAQRSATAAREIKELITASVDQVGQGTQLADQAGKTMEEIVSSIRRVSDIMVGINA 583 EVR+LAQRSA AA+EIK LI ASV++V G++ + AGKTM++IV SI V+ IM I A Sbjct: 534 EVRNLAQRSAVAAKEIKVLIAASVEKVEAGSKQVNAAGKTMDQIVQSITHVTTIMAEITA 593 Query: 584 ATAEQNTGIAQVGQAVTQMDSTTQQNAALVEQSAAAAISLSGQARELVQAVAVFRVAS 641 A+AEQ +GI + QA+ QMD TQQNAALVE++AAAA S+ Q L VAVF++A+ Sbjct: 594 ASAEQQSGIEHINQALGQMDGITQQNAALVEEAAAAAESMHEQTLALSATVAVFKLAN 651 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 324 bits (830), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 187/303 (61%), Positives = 235/303 (77%) Query: 337 TRATTAAIADAVRLTEAVSAGDLTQHVEVKGSDEVARLLTAMQTMTAQLSKVVGSVRSNS 396 +R+ T + AV + V+ GDL +EV SDE +LL A++ M L K V VR+ Sbjct: 213 SRSITRPLEYAVEVARTVAGGDLRNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGI 272 Query: 397 ESVATASAQIAQGNADLSKRTEEQASALQQTAASMEELGSTVQQNADGARQAGQLAREAA 456 E++ATAS QIA GN DLS RTEEQAS+L++TA+SMEEL STV+QNAD ARQA QLA A+ Sbjct: 273 ETIATASNQIAAGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSAS 332 Query: 457 DIASQGGAVVQQVVQTMQGIHASSDRISDIIGVIDGIAFQTNILALNAAVEAARAGEQGR 516 +A +GG VV QVV TM+ I++S+ +I DIIGVIDGIAFQTNILALNAAVEAARAGEQGR Sbjct: 333 GVAEKGGVVVSQVVDTMEDINSSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGR 392 Query: 517 GFAVVATEVRSLAQRSATAAREIKELITASVDQVGQGTQLADQAGKTMEEIVSSIRRVSD 576 GFAVVA+EVR+LAQRSA AA+EIK LI SVD+V G++L +AG TMEE+V+S++RV+D Sbjct: 393 GFAVVASEVRNLAQRSAAAAKEIKTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTD 452 Query: 577 IMVGINAATAEQNTGIAQVGQAVTQMDSTTQQNAALVEQSAAAAISLSGQARELVQAVAV 636 IM I AA+ EQ+ GI QV QA+ QMD TQQNAALVE++AAAA SL+ QA +L +AV+V Sbjct: 453 IMSEIMAASQEQSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSV 512 Query: 637 FRV 639 F++ Sbjct: 513 FKL 515 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 318 bits (815), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 200/392 (51%), Positives = 270/392 (68%), Gaps = 19/392 (4%) Query: 266 VRADQLTMPAPQWVATMTRIIDTQFVLVNASFEMMRDELQAKIPRLRNELIV-------- 317 +R L + A +A ++IDT+ V + + D ++ + NE+ + Sbjct: 128 IRKSILGVKAGGNIAEANQMIDTKMV---PALDAYVDSVKNVLGHYENEVKLADESITDD 184 Query: 318 -----LCLALAALALAALWVMVA--ITRATTAAIADAVRLTEAVSAGDLTQHVEV-KGSD 369 + L + A+ L ++A +T T + +A+++ E+V+ GDLT ++ + D Sbjct: 185 YLSGRMALIIGAVIAILLGTLIAWRLTVGITRPLHEALKVAESVAEGDLTARSDMAETQD 244 Query: 370 EVARLLTAMQTMTAQLSKVVGSVRSNSESVATASAQIAQGNADLSKRTEEQASALQQTAA 429 E LL+A+ M A L + V +R ++++ATAS++IA GN DLS RTE+QAS+L++TA+ Sbjct: 245 EPGLLLSALGRMQANLVRTVTQIRLGTDTIATASSEIASGNLDLSSRTEQQASSLEETAS 304 Query: 430 SMEELGSTVQQNADGARQAGQLAREAADIASQGGAVVQQVVQTMQGIHASSDRISDIIGV 489 SMEEL STV+QNAD +RQA QLA A+ +A +GGAVV QVV TM I+ S+ +I DIIGV Sbjct: 305 SMEELTSTVKQNADNSRQANQLAVAASTVAVKGGAVVSQVVDTMGAINNSAKKIVDIIGV 364 Query: 490 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAREIKELITASVDQ 549 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVR+LAQRSA AA+EIK LI SV++ Sbjct: 365 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKTLIGDSVEK 424 Query: 550 VGQGTQLADQAGKTMEEIVSSIRRVSDIMVGINAATAEQNTGIAQVGQAVTQMDSTTQQN 609 V G++L +AG TM+EIV ++RV+DIM I AA+ EQ+ GI QV QAV+QMD TQQN Sbjct: 425 VDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQAVSQMDQVTQQN 484 Query: 610 AALVEQSAAAAISLSGQARELVQAVAVFRVAS 641 AALVE++AAAA SL QAR L +AV+VFRV S Sbjct: 485 AALVEEAAAAAESLQDQARNLAEAVSVFRVGS 516 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 317 bits (811), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 200/374 (53%), Positives = 259/374 (69%), Gaps = 16/374 (4%) Query: 269 DQLTMPAPQWVATMTRIIDTQFVLVNASFEMMRDELQAKIPRLRN---ELIVLCLALAAL 325 ++L P VA + ID + +FE E Q + +RN I+ + LA Sbjct: 152 EELITPVRAGVAAL---IDLELREAKKAFE----ESQTRFVMVRNISIGAIIFGVLLAGF 204 Query: 326 ALAALWVMVAITRATTAAIADAVRLTEAVSAGDLTQHVEVKGSDEVARLLTAMQTMTAQL 385 A W++ I R + DAV++ +V+AGDLTQ + V ++E +LL A++ M L Sbjct: 205 M--AFWLIRLIARP----LHDAVQIARSVAAGDLTQQIHVNSTNETGQLLQALKDMNDSL 258 Query: 386 SKVVGSVRSNSESVATASAQIAQGNADLSKRTEEQASALQQTAASMEELGSTVQQNADGA 445 SK V +VR +E++ AS +IA GNADLS RTE QA +L++TA+SMEEL STV+QNAD A Sbjct: 259 SKTVSAVRRGTETITVASGEIASGNADLSSRTEAQAGSLEETASSMEELTSTVRQNADNA 318 Query: 446 RQAGQLAREAADIASQGGAVVQQVVQTMQGIHASSDRISDIIGVIDGIAFQTNILALNAA 505 RQA QL A ++A +GG+VV +VV TM I SS +I DIIGVID IAFQTNILALNAA Sbjct: 319 RQANQLVVSATEVAVKGGSVVSEVVITMGSIKDSSRKIVDIIGVIDSIAFQTNILALNAA 378 Query: 506 VEAARAGEQGRGFAVVATEVRSLAQRSATAAREIKELITASVDQVGQGTQLADQAGKTME 565 VEAARAGEQGRGFAVVA+EVR+LAQRSA AA+EIK LI SV +V G++L DQAG TM+ Sbjct: 379 VEAARAGEQGRGFAVVASEVRNLAQRSAGAAKEIKALIDDSVHKVDAGSKLVDQAGSTMQ 438 Query: 566 EIVSSIRRVSDIMVGINAATAEQNTGIAQVGQAVTQMDSTTQQNAALVEQSAAAAISLSG 625 EIV+S++ V+DIM I +A+ EQ+ GI QV QA++QMD TQQNAALVEQ+AAAA S+ Sbjct: 439 EIVTSVKHVADIMSEITSASQEQSDGIEQVNQAISQMDEMTQQNAALVEQAAAAAQSMQD 498 Query: 626 QARELVQAVAVFRV 639 QA EL AVA+F++ Sbjct: 499 QAVELSGAVAIFKL 512 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.316 0.126 0.328 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 817,955 Number of extensions: 25063 Number of successful extensions: 229 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 176 Number of HSP's successfully gapped: 15 Length of query: 646 Length of database: 1,000,347 Length adjustment: 88 Effective length of query: 558 Effective length of database: 710,387 Effective search space: 396395946 Effective search space used: 396395946 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)