BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3444.p (544 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 453 e-128 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 432 e-122 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 423 e-120 gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 392 e-110 gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis pro... 390 e-110 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 453 bits (1165), Expect = e-128, Method: Compositional matrix adjust. Identities = 281/515 (54%), Positives = 360/515 (69%), Gaps = 6/515 (1%) Query: 1 MKIADIKISVRLGACFSALILVMCVIATVGVKNLWAVTDVTDEIVNDRYVKVALVNQISE 60 M+ ++KI VRLG F L+++M + +GV L V T ++ + +K L Q + Sbjct: 1 MQFKNLKIGVRLGMAFGLLLVLMAFMTVMGVLRLQDVAKAT-VLMEEATIKERLAQQWIK 59 Query: 61 KVNTAARAIRN-AIIAPDEATMEKYLDRAVGN-TREVSEHMADLEKIINTPKGSELFNKI 118 + T +R A + + +K L + + + VS+ +LE ++ + +G +L + Sbjct: 60 GIET--NTVRTFARVRTSDPEQDKILQQEMSAISAAVSKQQDELETLVVSAEGKKLLATV 117 Query: 119 KDARADYAKPRDGVIALIRAQKKAEAADYLFKEVIPAQDKYFAALKEMTAFQAGIMEKSV 178 + RA Y RD V+ L R + AE + + ++ PA D Y +++ + Q E + Sbjct: 118 AEKRATYTAIRDDVMNL-REARGAELQNAIANKMKPAADAYIQSVEAVVNAQINNFEDAK 176 Query: 179 IKSRETSADAVKLMVGLSSVAILLSIMCAVMITRSITRPLNEAVEVASAVAAGDLTMQIA 238 + A L++ L VA+ L I+ A M+TRSIT+PL+ AV VA VA+GDLT +I Sbjct: 177 GRVDTIYQSARMLLIVLGLVALTLGIVLAWMLTRSITKPLDYAVSVARLVASGDLTGRIT 236 Query: 239 ASSKDETGALLSSLKVMNDNLHRIVTQVRQGTDTIATASGQIATGNLDLSSRTEQQAGAL 298 SKDETG LL +LK MND+L +TQVR G DTIATAS QIA+GNLDLSSRTE+QA +L Sbjct: 237 VDSKDETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSSRTEEQASSL 296 Query: 299 EETASAMEELTSTVKQNADNARQANTLAANASQVAIQGGSVVGEVVHTMSEINEASRKIV 358 EETAS+MEELTSTVKQNADNARQAN LA AS VA +GG+VV +VV TM IN ++RKIV Sbjct: 297 EETASSMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMDGINTSARKIV 356 Query: 359 EIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLID 418 +II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAAAAKEIK+LID Sbjct: 357 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLID 416 Query: 419 TSVARVENGSRLVEQAGATMSEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDE 478 SV +V+ GS+LV +AG TM EVV SVKRVTD++AEI AAS EQS GIEQ+NQAI QMD+ Sbjct: 417 DSVDKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIGQMDQ 476 Query: 479 VTQQNAALVEEAAAAAQSLQEQSSRLSETVGIFKL 513 VTQQNAALVEEAAAAA+SL EQ++ L++ V IFKL Sbjct: 477 VTQQNAALVEEAAAAAESLNEQAANLAQAVSIFKL 511 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 432 bits (1110), Expect = e-122, Method: Compositional matrix adjust. Identities = 276/535 (51%), Positives = 372/535 (69%), Gaps = 20/535 (3%) Query: 1 MKIADIKISVRLGACFSALILVMCVIATVGVKNLWAVTDVTDEIVNDRYV--KVALVNQI 58 M+IA++KI RLG F ++L++ + G+ L + + +V+D K A + Sbjct: 1 MRIANMKIGTRLGLGFGLILLLVAAMGATGIMRLENINGASRHLVDDSLSMQKSAQNWLL 60 Query: 59 SEKVNTAARAIRNAIIAPDEATMEKYLDRAV-GNTREVSEHMADLEKIINTPKGSELFNK 117 VN A+R + A++ + +++ +A+ +++++E +E IN+ K ELF + Sbjct: 61 GTSVN-ASRTL--ALVKASDPESQEFFQKAITAQSKQITEIQKSIEDRINSDKEKELFAE 117 Query: 118 IKDARADYAKPRDGVIALIRAQKKAEAADYLFKEVIPAQDKYFAALKEMTAFQAGIMEKS 177 + R+ Y R ++ + AEA + +++PA D Y ++K + G E Sbjct: 118 VAKKRSAYIDIRKSILGVKAGGNIAEANQMIDTKMVPALDAYVDSVKNVL----GHYENE 173 Query: 178 VIKSRETSAD-----AVKLMVGLSSVAILLSIMCAVMITRSITRPLNEAVEVASAVAAGD 232 V + E+ D + L++G + +AILL + A +T ITRPL+EA++VA +VA GD Sbjct: 174 VKLADESITDDYLSGRMALIIG-AVIAILLGTLIAWRLTVGITRPLHEALKVAESVAEGD 232 Query: 233 LTMQI-AASSKDETGALLSSLKVMNDNLHRIVTQVRQGTDTIATASGQIATGNLDLSSRT 291 LT + A ++DE G LLS+L M NL R VTQ+R GTDTIATAS +IA+GNLDLSSRT Sbjct: 233 LTARSDMAETQDEPGLLLSALGRMQANLVRTVTQIRLGTDTIATASSEIASGNLDLSSRT 292 Query: 292 EQQAGALEETASAMEELTSTVKQNADNARQANTLAANASQVAIQGGSVVGEVVHTMSEIN 351 EQQA +LEETAS+MEELTSTVKQNADN+RQAN LA AS VA++GG+VV +VV TM IN Sbjct: 293 EQQASSLEETASSMEELTSTVKQNADNSRQANQLAVAASTVAVKGGAVVSQVVDTMGAIN 352 Query: 352 EASRKIVEIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAK 411 +++KIV+II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LAQRSAAAAK Sbjct: 353 NSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAK 412 Query: 412 EIKSLIDTSVARVENGSRLVEQAGATMSEVVASVKRVTDVVAEITAASGEQSDGIEQINQ 471 EIK+LI SV +V+ GS+LV +AG TM E+V VKRV D++AEITAAS EQSDGIEQ+NQ Sbjct: 413 EIKTLIGDSVEKVDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQ 472 Query: 472 AIVQMDEVTQQNAALVEEAAAAAQSLQEQSSRLSETVGIFKLGSGDFRHATAAAA 526 A+ QMD+VTQQNAALVEEAAAAA+SLQ+Q+ L+E V +F++GSG +ATA +A Sbjct: 473 AVSQMDQVTQQNAALVEEAAAAAESLQDQARNLAEAVSVFRVGSG---YATAQSA 524 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 423 bits (1088), Expect = e-120, Method: Compositional matrix adjust. Identities = 271/520 (52%), Positives = 359/520 (69%), Gaps = 12/520 (2%) Query: 1 MKIADIKISVRLGACFSALILVMCVIATVGVKNLWAVTDVTDEIVNDRYVKVALVNQISE 60 MKI ++KI VRLG F+ ++L+M + +GV W + +V V R + A ++S Sbjct: 1 MKITNLKIGVRLGLAFAVVLLLMASMMVIGV---WRLQEVAQATV--RMEEAAEQERLSI 55 Query: 61 KVN--TAARAIRNA--IIAPDEATMEKYLDRAVGNTREVSEHMADLEKIINTPKGSELFN 116 + + +A AIR I + ++ +++ + + E+++ LE +I++ +G +L + Sbjct: 56 QWHAGNSANAIRTTARIRSTNQEVQQQFQNEMTAQSVEITKLQNKLESLIHSEEGKKLMS 115 Query: 117 KIKDARADYAKPRDGVIALIRAQKKA---EAADYLFKEVIPAQDKYFAALKEMTAFQAGI 173 + D R Y R V L A EA + ++ PA + Y ++++ FQ Sbjct: 116 AVGDKRTVYMDIRKEVFKLKADGSPAAEEEAKKIIASKMDPALETYSKTVQDVVDFQQVT 175 Query: 174 MEKSVIKSRETSADAVKLMVGLSSVAILLSIMCAVMITRSITRPLNEAVEVASAVAAGDL 233 ++ + A ++ L ++A+ LS + A +++RSITRPL AVEVA VA GDL Sbjct: 176 FLEAKTEVDNLYASGRMFLLTLGAIALALSALLAWLLSRSITRPLEYAVEVARTVAGGDL 235 Query: 234 TMQIAASSKDETGALLSSLKVMNDNLHRIVTQVRQGTDTIATASGQIATGNLDLSSRTEQ 293 +I +S DETG LL +L+ MND L + V++VR G +TIATAS QIA GNLDLSSRTE+ Sbjct: 236 RNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIETIATASNQIAAGNLDLSSRTEE 295 Query: 294 QAGALEETASAMEELTSTVKQNADNARQANTLAANASQVAIQGGSVVGEVVHTMSEINEA 353 QA +LEETAS+MEELTSTVKQNADNARQAN LA +AS VA +GG VV +VV TM +IN + Sbjct: 296 QASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGVVVSQVVDTMEDINSS 355 Query: 354 SRKIVEIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEI 413 ++KIV+II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSAAAAKEI Sbjct: 356 AKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEI 415 Query: 414 KSLIDTSVARVENGSRLVEQAGATMSEVVASVKRVTDVVAEITAASGEQSDGIEQINQAI 473 K+LI SV +V+ GS+LV +AG TM EVV SVKRVTD+++EI AAS EQS GIEQ+NQAI Sbjct: 416 KTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIMSEIMAASQEQSAGIEQVNQAI 475 Query: 474 VQMDEVTQQNAALVEEAAAAAQSLQEQSSRLSETVGIFKL 513 QMD+VTQQNAALVEEAAAAA+SL EQ+ +L+E V +FKL Sbjct: 476 GQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKL 515 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 392 bits (1007), Expect = e-110, Method: Compositional matrix adjust. Identities = 223/333 (66%), Positives = 274/333 (82%) Query: 193 VGLSSVAILLSIMCAVMITRSITRPLNEAVEVASAVAAGDLTMQIAASSKDETGALLSSL 252 +G +LL+ A + R I RPL++AV++A +VAAGDLT QI +S +ETG LL +L Sbjct: 192 IGAIIFGVLLAGFMAFWLIRLIARPLHDAVQIARSVAAGDLTQQIHVNSTNETGQLLQAL 251 Query: 253 KVMNDNLHRIVTQVRQGTDTIATASGQIATGNLDLSSRTEQQAGALEETASAMEELTSTV 312 K MND+L + V+ VR+GT+TI ASG+IA+GN DLSSRTE QAG+LEETAS+MEELTSTV Sbjct: 252 KDMNDSLSKTVSAVRRGTETITVASGEIASGNADLSSRTEAQAGSLEETASSMEELTSTV 311 Query: 313 KQNADNARQANTLAANASQVAIQGGSVVGEVVHTMSEINEASRKIVEIITVIDGIAFQTN 372 +QNADNARQAN L +A++VA++GGSVV EVV TM I ++SRKIV+II VID IAFQTN Sbjct: 312 RQNADNARQANQLVVSATEVAVKGGSVVSEVVITMGSIKDSSRKIVDIIGVIDSIAFQTN 371 Query: 373 ILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDTSVARVENGSRLVE 432 ILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA AAKEIK+LID SV +V+ GS+LV+ Sbjct: 372 ILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAGAAKEIKALIDDSVHKVDAGSKLVD 431 Query: 433 QAGATMSEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVTQQNAALVEEAAA 492 QAG+TM E+V SVK V D+++EIT+AS EQSDGIEQ+NQAI QMDE+TQQNAALVE+AAA Sbjct: 432 QAGSTMQEIVTSVKHVADIMSEITSASQEQSDGIEQVNQAISQMDEMTQQNAALVEQAAA 491 Query: 493 AAQSLQEQSSRLSETVGIFKLGSGDFRHATAAA 525 AAQS+Q+Q+ LS V IFKL +G +T+A+ Sbjct: 492 AAQSMQDQAVELSGAVAIFKLDAGGSAMSTSAS 524 >gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 573 Score = 390 bits (1002), Expect = e-110, Method: Compositional matrix adjust. Identities = 257/529 (48%), Positives = 343/529 (64%), Gaps = 34/529 (6%) Query: 5 DIKISVRLGACFSALILVMCVIATVGVKNLWAVTDVTDEIVNDRYVKVALVNQISEKVNT 64 ++ + +L + F L + ++A +G+ N+ + D +I N + ++ + + + Sbjct: 4 NMTVGTKLISSFLTLSVAGAIVAGIGIYNMGKINDKAGDIYNQELMGLSYIKDANIDLLF 63 Query: 65 AARAIRNAIIAPDEA-------TMEKYLDRAVGNTREVSEHMADLEKIINTPKGSELFNK 117 RA N +++ E ++KYL A E++A + + + LF K Sbjct: 64 IGRARGNVLLSTTEEERTLNKENIKKYLASA-------KENLAKAQPLFVSDSAKALFAK 116 Query: 118 IKDARADYAKPRDGVIALIRA----QKKAEAADYLFKEVIPAQ--DKYFAAL---KEMTA 168 DY K +AL Q+ AE + + + A D L KE+ A Sbjct: 117 YATVSQDYEKEMWRALALADKEPLQQRSAELTTSMAQTRLHANTLDNVLTELSKQKEVRA 176 Query: 169 FQAGIMEKSVIKSRETSADAVKLMVGLSSVAILLSIMCAVMITRSITRPL----NEAVEV 224 QA + + + S MV L ++ I+ V+ITR++ L N A V Sbjct: 177 AQAHVETEQLYDSSRA------FMVLLVILSAFSGILLGVLITRNLKGQLGGEPNYAAGV 230 Query: 225 ASAVAAGDLTMQIAASSKDETGALLSSLKVMNDNLHRIVTQVRQGTDTIATASGQIATGN 284 A+ +AAGDLT+ I SKD+T ++L +++ M D+L IV+QVR GTDTI TASGQIA GN Sbjct: 231 AARIAAGDLTVAIDLRSKDQT-SMLFAMREMRDSLASIVSQVRSGTDTITTASGQIAAGN 289 Query: 285 LDLSSRTEQQAGALEETASAMEELTSTVKQNADNARQANTLAANASQVAIQGGSVVGEVV 344 LDLSSRTE+QA ALEETAS+MEE+TSTVKQNA+N++QA+TLA +AS AI+GG+VV +VV Sbjct: 290 LDLSSRTEEQASALEETASSMEEITSTVKQNAENSQQASTLAVHASSTAIRGGAVVSQVV 349 Query: 345 HTMSEINEASRKIVEIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQ 404 TM I E+SRKIV+II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQ Sbjct: 350 DTMGSITESSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQ 409 Query: 405 RSAAAAKEIKSLIDTSVARVENGSRLVEQAGATMSEVVASVKRVTDVVAEITAASGEQSD 464 RSA+AAKEIK LI SV +V+ GS+LVEQAG TM E+V ++RV D++++ITAA EQS Sbjct: 410 RSASAAKEIKQLIGDSVEKVDAGSKLVEQAGTTMKEIVGGIQRVADIMSDITAAGREQSA 469 Query: 465 GIEQINQAIVQMDEVTQQNAALVEEAAAAAQSLQEQSSRLSETVGIFKL 513 GIEQ+NQAI QMDEVTQQNAALVEEAAAA+QSLQ+Q++ LSE V +FKL Sbjct: 470 GIEQVNQAIAQMDEVTQQNAALVEEAAAASQSLQDQATHLSEIVSVFKL 518 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.313 0.125 0.321 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 697,373 Number of extensions: 21999 Number of successful extensions: 186 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 128 Number of HSP's successfully gapped: 15 Length of query: 544 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 458 Effective length of database: 716,977 Effective search space: 328375466 Effective search space used: 328375466 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 131 (55.1 bits)