BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3443.p (542 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis pro... 370 e-103 gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 369 e-103 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 351 6e-98 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 347 1e-96 gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis pro... 345 4e-96 >gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 573 Score = 370 bits (950), Expect = e-103, Method: Compositional matrix adjust. Identities = 252/538 (46%), Positives = 336/538 (62%), Gaps = 46/538 (8%) Query: 4 FRSMKIGTKLLLAFAVSLLLTVILAAISLTSINSLTASIKAADTVQEQRLSPLYFAREAL 63 F++M +GTKL+ +F + I+A I + ++ + KA D ++ + Y + Sbjct: 2 FKNMTVGTKLISSFLTLSVAGAIVAGIGIYNMGKIND--KAGDIYNQELMGLSYIKDANI 59 Query: 64 DQTGIAARNAYVFRSDSDAQKELAIVDEQKQLYL-------------------KALRDME 104 D I V S ++ ++ L E + YL KAL Sbjct: 60 DLLFIGRARGNVLLSTTEEERTLN--KENIKKYLASAKENLAKAQPLFVSDSAKALFAKY 117 Query: 105 STFAGNKNFETVRAGLLKMADELKRPRQYREGGKMEEYRDFLVNECSPLRRQIVLDIN-- 162 +T + + E RA L +AD K P Q R E + Q L N Sbjct: 118 ATVSQDYEKEMWRA--LALAD--KEPLQQRSA------------ELTTSMAQTRLHANTL 161 Query: 163 -KVIDEVSAEND----KARQTTNDMASRASIIVAVLTIIVAIISVLIAFVITRGLLKQLG 217 V+ E+S + + +A T + + + +L I+ A +L+ +ITR L QLG Sbjct: 162 DNVLTELSKQKEVRAAQAHVETEQLYDSSRAFMVLLVILSAFSGILLGVLITRNLKGQLG 221 Query: 218 GEPAYAAQIAQQIAAGDLTSDVQTKLGDTTSLLFAIKQMRDSLVAIVGKVREGTHTIEQA 277 GEP YAA +A +IAAGDLT + + D TS+LFA+++MRDSL +IV +VR GT TI A Sbjct: 222 GEPNYAAGVAARIAAGDLTVAIDLRSKDQTSMLFAMREMRDSLASIVSQVRSGTDTITTA 281 Query: 278 SAEIASGNMDLSSRTEQQAGALEETASAMEELMSTVKQNADNAKQASQLAVSASEVASQG 337 S +IA+GN+DLSSRTE+QA ALEETAS+MEE+ STVKQNA+N++QAS LAV AS A +G Sbjct: 282 SGQIAAGNLDLSSRTEEQASALEETASSMEEITSTVKQNAENSQQASTLAVHASSTAIRG 341 Query: 338 GEVVGKVVTTMEGINTSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 397 G VV +VV TM I SSRKIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA Sbjct: 342 GAVVSQVVDTMGSITESSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 401 Query: 398 SEVRNLAQRSATAAKEITGLINDSVAQIEQGSSLVEQAGQTMENVVSSVKRVTDVVAEIS 457 SEVR+LAQRSA+AAKEI LI DSV +++ GS LVEQAG TM+ +V ++RV D++++I+ Sbjct: 402 SEVRSLAQRSASAAKEIKQLIGDSVEKVDAGSKLVEQAGTTMKEIVGGIQRVADIMSDIT 461 Query: 458 YASQEQSNGISQINVSITHMDEATQQNAALVEEAAAAANAMTEQASALSGLVSTFQLE 515 A +EQS GI Q+N +I MDE TQQNAALVEEAAAA+ ++ +QA+ LS +VS F+L+ Sbjct: 462 AAGREQSAGIEQVNQAIAQMDEVTQQNAALVEEAAAASQSLQDQATHLSEIVSVFKLD 519 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 369 bits (948), Expect = e-103, Method: Compositional matrix adjust. Identities = 247/528 (46%), Positives = 334/528 (63%), Gaps = 34/528 (6%) Query: 4 FRSMKIGTKLLLAFAVSLLLTVILAAISLTSINSLTASIKAADTVQE----QRLSPLYFA 59 F+++KIG +L +AF LL V++A +++ + L KA ++E +RL+ + Sbjct: 3 FKNLKIGVRLGMAFG---LLLVLMAFMTVMGVLRLQDVAKATVLMEEATIKERLAQQWI- 58 Query: 60 REALDQTGIAARNAYVF--------RSDSDAQKELAIVDEQKQLYLKALRDMESTFAGNK 111 GI F D Q+E++ + L + + G K Sbjct: 59 ------KGIETNTVRTFARVRTSDPEQDKILQQEMSAISAAVSKQQDELETLVVSAEGKK 112 Query: 112 NFETV---RAGLLKMADELKRPRQYREGGKMEEYRDFLVNECSPLRRQIVLDINKVIDEV 168 TV RA + D++ R+ R E ++ + N+ P + + V++ Sbjct: 113 LLATVAEKRATYTAIRDDVMNLREARGA----ELQNAIANKMKPAADAYIQSVEAVVNAQ 168 Query: 169 SAENDKARQTTNDMASRASIIVAVLTIIVAIISVLIAFVITRGLLKQLGGEPAYAAQIAQ 228 + A+ + + A +++ VL ++ + +++A+++TR + K L YA +A+ Sbjct: 169 INNFEDAKGRVDTIYQSARMLLIVLGLVALTLGIVLAWMLTRSITKPLD----YAVSVAR 224 Query: 229 QIAAGDLTSDVQTKLGDTTS-LLFAIKQMRDSLVAIVGKVREGTHTIEQASAEIASGNMD 287 +A+GDLT + D T LL A+K M DSL A + +VR G TI AS +IASGN+D Sbjct: 225 LVASGDLTGRITVDSKDETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLD 284 Query: 288 LSSRTEQQAGALEETASAMEELMSTVKQNADNAKQASQLAVSASEVASQGGEVVGKVVTT 347 LSSRTE+QA +LEETAS+MEEL STVKQNADNA+QA+QLAV+AS VA +GG VV KVV T Sbjct: 285 LSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDT 344 Query: 348 MEGINTSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRS 407 M+GINTS+RKIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRS Sbjct: 345 MDGINTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 404 Query: 408 ATAAKEITGLINDSVAQIEQGSSLVEQAGQTMENVVSSVKRVTDVVAEISYASQEQSNGI 467 A AAKEI LI+DSV +++ GS LV +AG TM VV SVKRVTD++AEI ASQEQS GI Sbjct: 405 AAAAKEIKTLIDDSVDKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGI 464 Query: 468 SQINVSITHMDEATQQNAALVEEAAAAANAMTEQASALSGLVSTFQLE 515 Q+N +I MD+ TQQNAALVEEAAAAA ++ EQA+ L+ VS F+L+ Sbjct: 465 EQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAANLAQAVSIFKLD 512 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 351 bits (900), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 220/412 (53%), Positives = 286/412 (69%), Gaps = 25/412 (6%) Query: 122 KMADEL--KRPRQYREG----------GKMEEYRDFLVNECSPLRRQIVLDINKVIDEVS 169 K+ADE+ KR R +E G+ EE D LVN+ PL + + +++++ Sbjct: 113 KVADEVTAKRIRYLKEAEQGLIAALRAGRNEEVEDILVNKMPPLFQSLTKSTDELVELQM 172 Query: 170 AENDKARQTTNDMASRASIIVAVLTIIVAIISVLI-AFVITR---GLLKQLGGEPAYAAQ 225 Q + + II AV+ +++ +I V I AF + R G LK++ Sbjct: 173 KSAATGYQDSQTLFHYFRII-AVVGVLLGLIGVAIYAFFLIRAITGPLKEM-------LL 224 Query: 226 IAQQIAAGDLTSDVQTK-LGDTTSLLFAIKQMRDSLVAIVGKVREGTHTIEQASAEIASG 284 IA+GDLTS+++ K + +L+ +++M+ L V +VREG+ I A+ EIA+G Sbjct: 225 HFDTIASGDLTSNIEVKSRNEMGTLMLGLQKMQKRLTDTVAQVREGSMAISTATTEIAAG 284 Query: 285 NMDLSSRTEQQAGALEETASAMEELMSTVKQNADNAKQASQLAVSASEVASQGGEVVGKV 344 N+DLSSRTEQQA +LEETAS+MEEL STVKQN DNA+QA+QLA SAS VA +GG VV V Sbjct: 285 NLDLSSRTEQQAASLEETASSMEELTSTVKQNTDNARQANQLATSASAVAVKGGAVVSDV 344 Query: 345 VTTMEGINTSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLA 404 V TM+ INTS+RKIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LA Sbjct: 345 VNTMDAINTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLA 404 Query: 405 QRSATAAKEITGLINDSVAQIEQGSSLVEQAGQTMENVVSSVKRVTDVVAEISYASQEQS 464 QRSA AAKEI LI+DSV +++ G+ LV +AG TM VV SVKRVTD+++EI ASQEQS Sbjct: 405 QRSAAAAKEIKHLIDDSVNKVDAGTRLVAEAGTTMTEVVDSVKRVTDIMSEILAASQEQS 464 Query: 465 NGISQINVSITHMDEATQQNAALVEEAAAAANAMTEQASALSGLVSTFQLEA 516 GI Q+N +I MDE TQQNAALVE+AAAAA+++ +QA+ LS +VS F+L+ Sbjct: 465 AGIEQVNTAIVQMDEVTQQNAALVEQAAAAASSLRDQATNLSTVVSVFKLQG 516 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 347 bits (889), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 245/537 (45%), Positives = 339/537 (63%), Gaps = 38/537 (7%) Query: 6 SMKIGTKLLLAFAVSLLLTVILAAISLTSINSLT-ASIKAADTVQEQRLSPLYFAREALD 64 ++KIG +L LAFAV LLL + I + + + A+++ + +++RLS + A + + Sbjct: 5 NLKIGVRLGLAFAVVLLLMASMMVIGVWRLQEVAQATVRMEEAAEQERLSIQWHAGNSAN 64 Query: 65 QTGIAAR----NAYV---FRSDSDAQK----------ELAIVDEQKQLYLKALRDMESTF 107 AR N V F+++ AQ E I E+ + + A+ D + + Sbjct: 65 AIRTTARIRSTNQEVQQQFQNEMTAQSVEITKLQNKLESLIHSEEGKKLMSAVGDKRTVY 124 Query: 108 AGNKNFETVRAGLLKMADELKRPRQYREGGKMEEYRDFLVNECSPLRRQIVLDINKVIDE 167 +R + K+ + + EE + + ++ P + V+D Sbjct: 125 M------DIRKEVFKLKADGSPAAE-------EEAKKIIASKMDPALETYSKTVQDVVDF 171 Query: 168 VSAENDKARQTTNDMASRASIIVAVLTIIVAIISVLIAFVITRGLLKQLGGEPAYAAQIA 227 +A+ +++ + + + L I +S L+A++++R + + L YA ++A Sbjct: 172 QQVTFLEAKTEVDNLYASGRMFLLTLGAIALALSALLAWLLSRSITRPL----EYAVEVA 227 Query: 228 QQIAAGDLTSDVQTKLGDTTS-LLFAIKQMRDSLVAIVGKVREGTHTIEQASAEIASGNM 286 + +A GDL + ++ D T LL A++ M D LV V +VR G TI AS +IA+GN+ Sbjct: 228 RTVAGGDLRNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIETIATASNQIAAGNL 287 Query: 287 DLSSRTEQQAGALEETASAMEELMSTVKQNADNAKQASQLAVSASEVASQGGEVVGKVVT 346 DLSSRTE+QA +LEETAS+MEEL STVKQNADNA+QA+QLAVSAS VA +GG VV +VV Sbjct: 288 DLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGVVVSQVVD 347 Query: 347 TMEGINTSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQR 406 TME IN+S++KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQR Sbjct: 348 TMEDINSSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQR 407 Query: 407 SATAAKEITGLINDSVAQIEQGSSLVEQAGQTMENVVSSVKRVTDVVAEISYASQEQSNG 466 SA AAKEI LI DSV +++ GS LV +AG TME VV+SVKRVTD+++EI ASQEQS G Sbjct: 408 SAAAAKEIKTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIMSEIMAASQEQSAG 467 Query: 467 ISQINVSITHMDEATQQNAALVEEAAAAANAMTEQASALSGLVSTFQLE--ASVTPS 521 I Q+N +I MD+ TQQNAALVEEAAAAA ++ EQA L+ VS F+L+ A+ TP+ Sbjct: 468 IEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKLDGVAASTPA 524 >gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 538 Score = 345 bits (884), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 191/318 (60%), Positives = 252/318 (79%) Query: 198 AIISVLIAFVITRGLLKQLGGEPAYAAQIAQQIAAGDLTSDVQTKLGDTTSLLFAIKQMR 257 A+ + L+ F++ R + QLGGEP YAAQI ++IA GDL++ + T+ GD SLL A++ M+ Sbjct: 197 AVAATLLGFLLVRSVYAQLGGEPQYAAQIVRRIAGGDLSATIITRKGDRNSLLAAMQDMQ 256 Query: 258 DSLVAIVGKVREGTHTIEQASAEIASGNMDLSSRTEQQAGALEETASAMEELMSTVKQNA 317 +L VG +R + TI AS +IA+GN+DLS+RTEQQA +LEETAS+MEEL +TVKQNA Sbjct: 257 QNLAKTVGDIRRASDTIATASGQIAAGNIDLSARTEQQASSLEETASSMEELTATVKQNA 316 Query: 318 DNAKQASQLAVSASEVASQGGEVVGKVVTTMEGINTSSRKIVDIISVIDGIAFQTNILAL 377 +A+QA+QLAVSAS++A QG VV +VVTTM+ I+ S+ +I DII VI+GIAFQTNILAL Sbjct: 317 GHAQQANQLAVSASDIAVQGNTVVAQVVTTMDSISASAGRIGDIIGVINGIAFQTNILAL 376 Query: 378 NAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAKEITGLINDSVAQIEQGSSLVEQAGQ 437 NAAVEAAR GEQGRGFAVVA+EVR+LAQRSA AAKEI LI+DS+ ++ G++LV+QAG Sbjct: 377 NAAVEAARVGEQGRGFAVVATEVRSLAQRSAEAAKEIKSLIDDSLEKVGAGATLVDQAGS 436 Query: 438 TMENVVSSVKRVTDVVAEISYASQEQSNGISQINVSITHMDEATQQNAALVEEAAAAANA 497 TM +V+S+ +VTD++ EI+ AS+EQ+ GI Q+N +I MD TQQNAALVEEAAAAA + Sbjct: 437 TMNEIVASIGQVTDIMGEITTASREQTAGIEQVNQAIGQMDRVTQQNAALVEEAAAAAGS 496 Query: 498 MTEQASALSGLVSTFQLE 515 + EQA +L +VS F+LE Sbjct: 497 LQEQACSLVQVVSVFKLE 514 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.313 0.125 0.314 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 652,158 Number of extensions: 19989 Number of successful extensions: 171 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 116 Number of HSP's successfully gapped: 15 Length of query: 542 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 456 Effective length of database: 716,977 Effective search space: 326941512 Effective search space used: 326941512 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 131 (55.1 bits)