BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3440.p
         (82 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095433|ref|YP_001100508.1| hypothetical protein HEAR2252 [...   100   1e-23

>gi|134095433|ref|YP_001100508.1| hypothetical protein HEAR2252
          [Herminiimonas arsenicoxydans]
          Length = 89

 Score =  100 bits (249), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/82 (64%), Positives = 63/82 (76%), Gaps = 3/82 (3%)

Query: 1  MIDWVPIVFVTFKLLVFITGMFFAIKWHYDQGKKDKGKQMMDTRAVLRTSGLVALVFLLL 60
          M+DW  IVFVTFK+LV  TGMFFAIKWHYDQGKKDK K+    RAVLR  G VA+VF+L 
Sbjct: 11 MMDWTLIVFVTFKVLVLGTGMFFAIKWHYDQGKKDKDKE---KRAVLRAGGKVAVVFVLS 67

Query: 61 LLGLWIVTDIVSKMLGLDMTFP 82
          LL L +VT +++  LGLD+ FP
Sbjct: 68 LLCLALVTFVLASKLGLDLNFP 89


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.334    0.147    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 117,343
Number of extensions: 2782
Number of successful extensions: 14
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 82
Length of database: 1,000,347
Length adjustment: 52
Effective length of query: 30
Effective length of database: 829,007
Effective search space: 24870210
Effective search space used: 24870210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 121 (51.2 bits)