BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3439.p (582 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 440 e-125 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 395 e-111 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 389 e-109 gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 380 e-106 gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis pro... 355 3e-99 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 440 bits (1132), Expect = e-125, Method: Compositional matrix adjust. Identities = 270/583 (46%), Positives = 373/583 (63%), Gaps = 23/583 (3%) Query: 1 MRFNNFSIATRLAIAFSVLILAIATIVTLGLIRLGDINEAINLVVNDRYKKIALINTIAG 60 M+F N I RL +AF +L++ +A + +G++RL D+ +A L+ K+ I G Sbjct: 1 MQFKNLKIGVRLGMAFGLLLVLMAFMTVMGVLRLQDVAKATVLMEEATIKERLAQQWIKG 60 Query: 61 KMDDVAISVRNQLLTSDPGQAAREQANTKELASQVAAHFQELETFLIDPAARAQFAKVMT 120 ++ + ++ TSDP Q Q +++ V+ ELET ++ + A V Sbjct: 61 -IETNTVRTFARVRTSDPEQDKILQQEMSAISAAVSKQQDELETLVVSAEGKKLLATVAE 119 Query: 121 ARDQYTSLRTQIEELNAKGQRETAVELLVV-KLTSLQKAYFGELEAFSNMQKKLMDQSVE 179 R YT++R + +N + R ++ + K+ AY +EA N Q + + Sbjct: 120 KRATYTAIRDDV--MNLREARGAELQNAIANKMKPAADAYIQSVEAVVNAQINNFEDAKG 177 Query: 180 DAEAAYNTTRLIMLGSGLLSTLFASLIAWTISRSITRPLSRAVEVAETVAAGDLTAVITA 239 + Y + R++++ GL++ ++AW ++RSIT+PL AV VA VA+GDLT IT Sbjct: 178 RVDTIYQSARMLLIVLGLVALTLGIVLAWMLTRSITKPLDYAVSVARLVASGDLTGRITV 237 Query: 240 HSTDETGRLLQALAAMNQKLKAIVLEVRHSTDSMVAASTQIATGNLDLSSRTEEQASALE 299 S DETG+LLQAL MN L A + +VR D++ AS QIA+GNLDLSSRTEEQAS+LE Sbjct: 238 DSKDETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSSRTEEQASSLE 297 Query: 300 ETASSLEQLTSSVKQNADHTRKSSELAGTATAVANQGGEAVKQVVQTMGAINDSSRKIVD 359 ETASS+E+LTS+VKQNAD+ R++++LA TA+ VA +GG V +VV TM IN S+RKIVD Sbjct: 298 ETASSMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMDGINTSARKIVD 357 Query: 360 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSATAAKEIKELIND 419 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AAKEIK LI+D Sbjct: 358 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDD 417 Query: 420 SVNQVSSGTELVAQAGNTMDQVVSSIEQVGHIVSEISSATHEQSEGIEQVNQAIMQMDNT 479 SV++V +G++LVA+AG TM +VV S+++V I++EI +A+ EQS GIEQVNQAI QMD Sbjct: 418 SVDKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIGQMDQV 477 Query: 480 TQQNAALVEEAAAAAQALQDQAQRLLELVSVFRLDEAGGPELRTMQMPQAASLKSSAVTS 539 TQQNAALVEEAAAAA++L +QA L + VS+F+LD ++P AAS Sbjct: 478 TQQNAALVEEAAAAAESLNEQAANLAQAVSIFKLDGVANSSRVATRLPVAAS-------- 529 Query: 540 KALPSKQQTQPQSARPAAIGANQAPRALPNSIKDDKKEEWESF 582 P+ +Q A+ AP+ + N + ++WE F Sbjct: 530 -NAPATRQ----------FAASPAPKKIANETRPVSGDDWEEF 561 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 395 bits (1014), Expect = e-111, Method: Compositional matrix adjust. Identities = 271/603 (44%), Positives = 376/603 (62%), Gaps = 49/603 (8%) Query: 1 MRFNNFSIATRLAIAFSVLILAIATIVTLGLIRLGDINEAINLVVND-----RYKKIALI 55 MR N I TRL + F +++L +A + G++RL +IN A +V+D + + L+ Sbjct: 1 MRIANMKIGTRLGLGFGLILLLVAAMGATGIMRLENINGASRHLVDDSLSMQKSAQNWLL 60 Query: 56 NTIAGKMDDVAISVRNQLLTSDPGQAAREQANTKELASQVAAHFQELETFLIDPAARAQF 115 T +A+ + SDP Q + Q+ + +E + + F Sbjct: 61 GTSVNASRTLAL-----VKASDPESQEFFQKAITAQSKQITEIQKSIEDRINSDKEKELF 115 Query: 116 AKVMTARDQYTSLRTQIEELNAKGQRETAVELLVVKLTSLQKAYFGE----LEAFSNMQK 171 A+V R Y +R I + A G A +++ K+ AY L + N + Sbjct: 116 AEVAKKRSAYIDIRKSILGVKAGGNIAEANQMIDTKMVPALDAYVDSVKNVLGHYEN-EV 174 Query: 172 KLMDQSVEDAEAAYNTTRLIMLGSGLLSTLFASLIAWTISRSITRPLSRAVEVAETVAAG 231 KL D+S+ D Y + R+ ++ +++ L +LIAW ++ ITRPL A++VAE+VA G Sbjct: 175 KLADESITDD---YLSGRMALIIGAVIAILLGTLIAWRLTVGITRPLHEALKVAESVAEG 231 Query: 232 DLTA-VITAHSTDETGRLLQALAAMNQKLKAIVLEVRHSTDSMVAASTQIATGNLDLSSR 290 DLTA A + DE G LL AL M L V ++R TD++ AS++IA+GNLDLSSR Sbjct: 232 DLTARSDMAETQDEPGLLLSALGRMQANLVRTVTQIRLGTDTIATASSEIASGNLDLSSR 291 Query: 291 TEEQASALEETASSLEQLTSSVKQNADHTRKSSELAGTATAVANQGGEAVKQVVQTMGAI 350 TE+QAS+LEETASS+E+LTS+VKQNAD++R++++LA A+ VA +GG V QVV TMGAI Sbjct: 292 TEQQASSLEETASSMEELTSTVKQNADNSRQANQLAVAASTVAVKGGAVVSQVVDTMGAI 351 Query: 351 NDSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSATAA 410 N+S++KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LAQRSA AA Sbjct: 352 NNSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAA 411 Query: 411 KEIKELINDSVNQVSSGTELVAQAGNTMDQVVSSIEQVGHIVSEISSATHEQSEGIEQVN 470 KEIK LI DSV +V +G++LVA+AG TMD++V +++V I++EI++A+ EQS+GIEQVN Sbjct: 412 KEIKTLIGDSVEKVDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVN 471 Query: 471 QAIMQMDNTTQQNAALVEEAAAAAQALQDQAQRLLELVSVFRLD------EAGGPELRT- 523 QA+ QMD TQQNAALVEEAAAAA++LQDQA+ L E VSVFR+ ++ P RT Sbjct: 472 QAVSQMDQVTQQNAALVEEAAAAAESLQDQARNLAEAVSVFRVGSGYATAQSAAP--RTV 529 Query: 524 ----MQMPQAASLKSSAVTSKALPSKQQTQPQSARPAAIGANQAPRALPNSIKDDKKEEW 579 M P AA +K S+ +S +L + + + +P A G ++W Sbjct: 530 QSTAMHKPLAAPVKKSS-SSSSLTVTESKKVAAPKPVAAGG----------------DDW 572 Query: 580 ESF 582 E F Sbjct: 573 EEF 575 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 389 bits (999), Expect = e-109, Method: Compositional matrix adjust. Identities = 256/534 (47%), Positives = 347/534 (64%), Gaps = 38/534 (7%) Query: 1 MRFNNFSIATRLAIAFSVLILAIATIVTLGLIRLGDINEAINLVVNDRYKKIALINTIAG 60 M+ N I RL +AF+V++L +A+++ +G+ RL ++ +A T+ Sbjct: 1 MKITNLKIGVRLGLAFAVVLLLMASMMVIGVWRLQEVAQA----------------TV-- 42 Query: 61 KMDDVAISVR--NQLLTSDPGQAAREQANTKELASQVAAHFQ---------------ELE 103 +M++ A R Q + A R A + +V FQ +LE Sbjct: 43 RMEEAAEQERLSIQWHAGNSANAIRTTARIRSTNQEVQQQFQNEMTAQSVEITKLQNKLE 102 Query: 104 TFLIDPAARAQFAKVMTARDQYTSLRTQIEELNAKGQ---RETAVELLVVKLTSLQKAYF 160 + + + + V R Y +R ++ +L A G E A +++ K+ + Y Sbjct: 103 SLIHSEEGKKLMSAVGDKRTVYMDIRKEVFKLKADGSPAAEEEAKKIIASKMDPALETYS 162 Query: 161 GELEAFSNMQKKLMDQSVEDAEAAYNTTRLIMLGSGLLSTLFASLIAWTISRSITRPLSR 220 ++ + Q+ ++ + + Y + R+ +L G ++ ++L+AW +SRSITRPL Sbjct: 163 KTVQDVVDFQQVTFLEAKTEVDNLYASGRMFLLTLGAIALALSALLAWLLSRSITRPLEY 222 Query: 221 AVEVAETVAAGDLTAVITAHSTDETGRLLQALAAMNQKLKAIVLEVRHSTDSMVAASTQI 280 AVEVA TVA GDL I +S+DETG+LLQAL MN L V EVR +++ AS QI Sbjct: 223 AVEVARTVAGGDLRNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIETIATASNQI 282 Query: 281 ATGNLDLSSRTEEQASALEETASSLEQLTSSVKQNADHTRKSSELAGTATAVANQGGEAV 340 A GNLDLSSRTEEQAS+LEETASS+E+LTS+VKQNAD+ R++++LA +A+ VA +GG V Sbjct: 283 AAGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGVVV 342 Query: 341 KQVVQTMGAINDSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR 400 QVV TM IN S++KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR Sbjct: 343 SQVVDTMEDINSSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR 402 Query: 401 ALAQRSATAAKEIKELINDSVNQVSSGTELVAQAGNTMDQVVSSIEQVGHIVSEISSATH 460 LAQRSA AAKEIK LI DSV++V G++LVA+AG TM++VV+S+++V I+SEI +A+ Sbjct: 403 NLAQRSAAAAKEIKTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIMSEIMAASQ 462 Query: 461 EQSEGIEQVNQAIMQMDNTTQQNAALVEEAAAAAQALQDQAQRLLELVSVFRLD 514 EQS GIEQVNQAI QMD TQQNAALVEEAAAAA++L +QA +L E VSVF+LD Sbjct: 463 EQSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKLD 516 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 380 bits (975), Expect = e-106, Method: Compositional matrix adjust. Identities = 264/594 (44%), Positives = 366/594 (61%), Gaps = 37/594 (6%) Query: 3 FNNFSIATRLAIAFSVLILAIATIVTLGLIRLGDINEAINLVVNDRYKKIALINTIAGKM 62 N +I + L +L L + LGL L N+A+ V DR I +NT+ Sbjct: 2 LKNITIKSLLLFVMGILSLLLIATGILGLTSLDTTNKALRSVYEDRTVPIGQLNTV---- 57 Query: 63 DDVAISVRNQL-----LTSDPGQAAREQANTKELASQVAAHFQELETFLIDPAARAQFAK 117 + +S NQL + DPG + ++ + ++ F + P A+ K Sbjct: 58 --ITLSTINQLDLAASIYGDPGLVIPKMDAIEKHSKEINQAFDAFMASTLTPEAKVLADK 115 Query: 118 VMTARDQYTSLRTQIEELNAKGQRETAV-ELLVVKLTSLQKAYFGELEAFSNMQKKLMDQ 176 R + Q ++G V E++ + L + A +++ + + Sbjct: 116 FAADRKIFLEKALQPAIAASRGGNVLRVTEIVNGPMEELITPVRAGVAALIDLELREAKK 175 Query: 177 SVEDAEAAYNTTRLIMLGSGLLSTLFASLIAWTISRSITRPLSRAVEVAETVAAGDLTAV 236 + E+++ + R I +G+ + L A +A+ + R I RPL AV++A +VAAGDLT Sbjct: 176 AFEESQTRFVMVRNISIGAIIFGVLLAGFMAFWLIRLIARPLHDAVQIARSVAAGDLTQQ 235 Query: 237 ITAHSTDETGRLLQALAAMNQKLKAIVLEVRHSTDSMVAASTQIATGNLDLSSRTEEQAS 296 I +ST+ETG+LLQAL MN L V VR T+++ AS +IA+GN DLSSRTE QA Sbjct: 236 IHVNSTNETGQLLQALKDMNDSLSKTVSAVRRGTETITVASGEIASGNADLSSRTEAQAG 295 Query: 297 ALEETASSLEQLTSSVKQNADHTRKSSELAGTATAVANQGGEAVKQVVQTMGAINDSSRK 356 +LEETASS+E+LTS+V+QNAD+ R++++L +AT VA +GG V +VV TMG+I DSSRK Sbjct: 296 SLEETASSMEELTSTVRQNADNARQANQLVVSATEVAVKGGSVVSEVVITMGSIKDSSRK 355 Query: 357 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSATAAKEIKEL 416 IVDII VID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA AAKEIK L Sbjct: 356 IVDIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAGAAKEIKAL 415 Query: 417 INDSVNQVSSGTELVAQAGNTMDQVVSSIEQVGHIVSEISSATHEQSEGIEQVNQAIMQM 476 I+DSV++V +G++LV QAG+TM ++V+S++ V I+SEI+SA+ EQS+GIEQVNQAI QM Sbjct: 416 IDDSVHKVDAGSKLVDQAGSTMQEIVTSVKHVADIMSEITSASQEQSDGIEQVNQAISQM 475 Query: 477 DNTTQQNAALVEEAAAAAQALQDQAQRLLELVSVFRLDEAGGPELRTMQMPQ--AASLKS 534 D TQQNAALVE+AAAAAQ++QDQA L V++F+LD AGG + T + A +L++ Sbjct: 476 DEMTQQNAALVEQAAAAAQSMQDQAVELSGAVAIFKLD-AGGSAMSTSASTRRAAPALQA 534 Query: 535 S--AVTSKAL---PSKQ-QTQPQSARPAAIGANQAPRALPNSIKDDKKEEWESF 582 + A TS+AL P KQ +T+PQ +P + D ++WE F Sbjct: 535 ANPATTSRALTAAPHKQLETKPQ--KPIS--------------ADKSGDDWEEF 572 >gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 573 Score = 355 bits (912), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 241/519 (46%), Positives = 328/519 (63%), Gaps = 8/519 (1%) Query: 3 FNNFSIATRLAIAFSVLILAIATIVTLGLIRLGDINEAINLVVNDRYKKIALINTIAGKM 62 F N ++ T+L +F L +A A + +G+ +G IN+ + N ++ I + Sbjct: 2 FKNMTVGTKLISSFLTLSVAGAIVAGIGIYNMGKINDKAGDIYNQELMGLSYIKDANIDL 61 Query: 63 DDVAISVRNQLLTSDPGQAAREQANTKELASQVAAHFQELETFLIDPAARAQFAKVMTAR 122 + + N LL++ + + N K+ + + + + + +A+A FAK T Sbjct: 62 LFIGRARGNVLLSTTEEERTLNKENIKKYLASAKENLAKAQPLFVSDSAKALFAKYATVS 121 Query: 123 DQYTSLRTQIEELNAKG--QRETAVELLVVKLTSLQKAYFGE-LEAFSNMQKKLMDQSVE 179 Y + L K Q+ +A + T L L S ++ Q+ Sbjct: 122 QDYEKEMWRALALADKEPLQQRSAELTTSMAQTRLHANTLDNVLTELSKQKEVRAAQAHV 181 Query: 180 DAEAAYNTTRLIMLGSGLLSTLFASLIAWTISRSITRPL----SRAVEVAETVAAGDLTA 235 + E Y+++R M+ +LS L+ I+R++ L + A VA +AAGDLT Sbjct: 182 ETEQLYDSSRAFMVLLVILSAFSGILLGVLITRNLKGQLGGEPNYAAGVAARIAAGDLTV 241 Query: 236 VITAHSTDETGRLLQALAAMNQKLKAIVLEVRHSTDSMVAASTQIATGNLDLSSRTEEQA 295 I S D+T L A+ M L +IV +VR TD++ AS QIA GNLDLSSRTEEQA Sbjct: 242 AIDLRSKDQTSMLF-AMREMRDSLASIVSQVRSGTDTITTASGQIAAGNLDLSSRTEEQA 300 Query: 296 SALEETASSLEQLTSSVKQNADHTRKSSELAGTATAVANQGGEAVKQVVQTMGAINDSSR 355 SALEETASS+E++TS+VKQNA++++++S LA A++ A +GG V QVV TMG+I +SSR Sbjct: 301 SALEETASSMEEITSTVKQNAENSQQASTLAVHASSTAIRGGAVVSQVVDTMGSITESSR 360 Query: 356 KIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSATAAKEIKE 415 KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIK+ Sbjct: 361 KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQ 420 Query: 416 LINDSVNQVSSGTELVAQAGNTMDQVVSSIEQVGHIVSEISSATHEQSEGIEQVNQAIMQ 475 LI DSV +V +G++LV QAG TM ++V I++V I+S+I++A EQS GIEQVNQAI Q Sbjct: 421 LIGDSVEKVDAGSKLVEQAGTTMKEIVGGIQRVADIMSDITAAGREQSAGIEQVNQAIAQ 480 Query: 476 MDNTTQQNAALVEEAAAAAQALQDQAQRLLELVSVFRLD 514 MD TQQNAALVEEAAAA+Q+LQDQA L E+VSVF+LD Sbjct: 481 MDEVTQQNAALVEEAAAASQSLQDQATHLSEIVSVFKLD 519 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.311 0.123 0.313 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 793,111 Number of extensions: 25387 Number of successful extensions: 226 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 162 Number of HSP's successfully gapped: 14 Length of query: 582 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 495 Effective length of database: 713,682 Effective search space: 353272590 Effective search space used: 353272590 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 131 (55.1 bits)