BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3432.p (284 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095307|ref|YP_001100382.1| transposase [Herminiimonas arse... 292 1e-80 gi|134094784|ref|YP_001099859.1| transposase [Herminiimonas arse... 292 1e-80 gi|134095428|ref|YP_001100503.1| transposase [Herminiimonas arse... 248 3e-67 gi|134095379|ref|YP_001100454.1| transposase [Herminiimonas arse... 248 3e-67 gi|134095299|ref|YP_001100374.1| transposase [Herminiimonas arse... 248 3e-67 >gi|134095307|ref|YP_001100382.1| transposase [Herminiimonas arsenicoxydans] Length = 301 Score = 292 bits (748), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 147/283 (51%), Positives = 194/283 (68%), Gaps = 1/283 (0%) Query: 2 AHEPQHAVRTMCRVMRVHPSGYYAWKARPESERTKENRRLLGLIKQSWLESGGVYGYRKI 61 +H + +V +MC+ + V SGYYAW P S+R +E+ RLL LI+ S++ S G+YG ++ Sbjct: 19 SHRDEFSVISMCQALDVERSGYYAWLKNPLSDRAQEDARLLKLIRASFMASHGIYGAPRV 78 Query: 62 AADLRDLGERCGKHRVYRLMRTEGLKCQTGYRRRAGRYGKPAVIAPNHLQQKFDVPAPNL 121 DLR+ GE C KHRV RLMR GL+ GYR R KP+ + PN LQ++F V PN Sbjct: 79 FQDLRERGELCSKHRVARLMRENGLRALHGYRIRHIPVSKPSPLIPNLLQRQFTVTRPNE 138 Query: 122 AWVTDITYIRTHEGWLYLAVVLDLFSRQVIGWSMGSRIDRNLAMDALLMAVWRRSPEQEV 181 AWVTDITYIRT +GWLYLAVV+DLFSR+V+GW++ I R L +DA+ AV R P + Sbjct: 139 AWVTDITYIRTWQGWLYLAVVMDLFSRKVVGWAVRPTIHRELVLDAIAKAVRSRRP-RHT 197 Query: 182 IVHSDQGSQFSSHDWQAFLKSHNLVPSMSRRGNCHDNAVAESFFQLLKRERIKRRIYADR 241 ++HSDQG+Q+ S W+ F K+++L PSMSRR NC DNAV ESFF LK+ER+K+ IYADR Sbjct: 198 LIHSDQGTQYGSDAWRRFCKANHLEPSMSRRANCWDNAVVESFFSSLKKERVKKHIYADR 257 Query: 242 NEARSDVFDYIEMFYNPKRRHSYSGNVSPVQFEQQYFNRLESV 284 A D+ +YI+ FYN RRHS+ G VSP FE + R +V Sbjct: 258 ETATLDLAEYIDDFYNGVRRHSHLGGVSPNTFETAHRRRKSAV 300 >gi|134094784|ref|YP_001099859.1| transposase [Herminiimonas arsenicoxydans] Length = 301 Score = 292 bits (748), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 147/283 (51%), Positives = 194/283 (68%), Gaps = 1/283 (0%) Query: 2 AHEPQHAVRTMCRVMRVHPSGYYAWKARPESERTKENRRLLGLIKQSWLESGGVYGYRKI 61 +H + +V +MC+ + V SGYYAW P S+R +E+ RLL LI+ S++ S G+YG ++ Sbjct: 19 SHRDEFSVISMCQALDVERSGYYAWLKNPLSDRAQEDARLLKLIRASFMASHGIYGAPRV 78 Query: 62 AADLRDLGERCGKHRVYRLMRTEGLKCQTGYRRRAGRYGKPAVIAPNHLQQKFDVPAPNL 121 DLR+ GE C KHRV RLMR GL+ GYR R KP+ + PN LQ++F V PN Sbjct: 79 FQDLRERGELCSKHRVARLMRENGLRALHGYRIRHIPVSKPSPLIPNLLQRQFTVTRPNE 138 Query: 122 AWVTDITYIRTHEGWLYLAVVLDLFSRQVIGWSMGSRIDRNLAMDALLMAVWRRSPEQEV 181 AWVTDITYIRT +GWLYLAVV+DLFSR+V+GW++ I R L +DA+ AV R P + Sbjct: 139 AWVTDITYIRTWQGWLYLAVVMDLFSRKVVGWAVRPTIHRELVLDAIAKAVRSRRP-RHT 197 Query: 182 IVHSDQGSQFSSHDWQAFLKSHNLVPSMSRRGNCHDNAVAESFFQLLKRERIKRRIYADR 241 ++HSDQG+Q+ S W+ F K+++L PSMSRR NC DNAV ESFF LK+ER+K+ IYADR Sbjct: 198 LIHSDQGTQYGSDAWRRFCKANHLEPSMSRRANCWDNAVVESFFSSLKKERVKKHIYADR 257 Query: 242 NEARSDVFDYIEMFYNPKRRHSYSGNVSPVQFEQQYFNRLESV 284 A D+ +YI+ FYN RRHS+ G VSP FE + R +V Sbjct: 258 ETATLDLAEYIDDFYNGVRRHSHLGGVSPNTFETAHRRRKSAV 300 >gi|134095428|ref|YP_001100503.1| transposase [Herminiimonas arsenicoxydans] Length = 288 Score = 248 bits (633), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 131/272 (48%), Positives = 174/272 (63%), Gaps = 6/272 (2%) Query: 9 VRTMCRVMRVHPSGYYAWKARPESERTKENRRLLGLIKQSWLESGGVYGYRKIAADLRDL 68 V C + V SG+YAW R +R EN +L + S+++S YG R++ DL Sbjct: 15 VALTCDTLGVSRSGFYAWLTRTPCKRRTENEQLGRAVHHSFIQSDRTYGARRVWHDLLAS 74 Query: 69 GERCGKHRVYRLMRTEGLKCQTGYRRRA---GRYGKPAV-IAPNHLQQKFDVPAPNLAWV 124 G RCG HRV RLM+ + L+ + RRR+ R +P + IA N L ++FD APN WV Sbjct: 75 GYRCGLHRVERLMQAQALRARP--RRRSLPIDRGERPVIGIAANVLDRQFDASAPNRKWV 132 Query: 125 TDITYIRTHEGWLYLAVVLDLFSRQVIGWSMGSRIDRNLAMDALLMAVWRRSPEQEVIVH 184 D TYI + EGWLYLAVVLDL+SR+VIGWSM ++ L DAL+MAVWRR + V+ H Sbjct: 133 ADFTYIWSAEGWLYLAVVLDLYSRRVIGWSMKPEMNAQLVADALMMAVWRRGKPESVMHH 192 Query: 185 SDQGSQFSSHDWQAFLKSHNLVPSMSRRGNCHDNAVAESFFQLLKRERIKRRIYADRNEA 244 SD+GSQ++S +Q L + SMSR GN DN+ ESFF LK ER+ R+++ R++ Sbjct: 193 SDRGSQYTSEQFQRLLLELGVTCSMSRAGNVWDNSAMESFFSSLKTERLSRKMFRTRDDI 252 Query: 245 RSDVFDYIEMFYNPKRRHSYSGNVSPVQFEQQ 276 R++VFDYIE FYNP RRHS G +SP+ FEQQ Sbjct: 253 RAEVFDYIERFYNPVRRHSTLGYISPIDFEQQ 284 >gi|134095379|ref|YP_001100454.1| transposase [Herminiimonas arsenicoxydans] Length = 288 Score = 248 bits (633), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 131/272 (48%), Positives = 174/272 (63%), Gaps = 6/272 (2%) Query: 9 VRTMCRVMRVHPSGYYAWKARPESERTKENRRLLGLIKQSWLESGGVYGYRKIAADLRDL 68 V C + V SG+YAW R +R EN +L + S+++S YG R++ DL Sbjct: 15 VALTCDTLGVSRSGFYAWLTRTPCKRRTENEQLGRAVHHSFIQSDRTYGARRVWHDLLAS 74 Query: 69 GERCGKHRVYRLMRTEGLKCQTGYRRRA---GRYGKPAV-IAPNHLQQKFDVPAPNLAWV 124 G RCG HRV RLM+ + L+ + RRR+ R +P + IA N L ++FD APN WV Sbjct: 75 GYRCGLHRVERLMQAQALRARP--RRRSLPIDRGERPVIGIAANVLDRQFDASAPNRKWV 132 Query: 125 TDITYIRTHEGWLYLAVVLDLFSRQVIGWSMGSRIDRNLAMDALLMAVWRRSPEQEVIVH 184 D TYI + EGWLYLAVVLDL+SR+VIGWSM ++ L DAL+MAVWRR + V+ H Sbjct: 133 ADFTYIWSAEGWLYLAVVLDLYSRRVIGWSMKPEMNAQLVADALMMAVWRRGKPESVMHH 192 Query: 185 SDQGSQFSSHDWQAFLKSHNLVPSMSRRGNCHDNAVAESFFQLLKRERIKRRIYADRNEA 244 SD+GSQ++S +Q L + SMSR GN DN+ ESFF LK ER+ R+++ R++ Sbjct: 193 SDRGSQYTSEQFQRLLLELGVTCSMSRAGNVWDNSAMESFFSSLKTERLSRKMFRTRDDI 252 Query: 245 RSDVFDYIEMFYNPKRRHSYSGNVSPVQFEQQ 276 R++VFDYIE FYNP RRHS G +SP+ FEQQ Sbjct: 253 RAEVFDYIERFYNPVRRHSTLGYISPIDFEQQ 284 >gi|134095299|ref|YP_001100374.1| transposase [Herminiimonas arsenicoxydans] Length = 288 Score = 248 bits (633), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 131/272 (48%), Positives = 174/272 (63%), Gaps = 6/272 (2%) Query: 9 VRTMCRVMRVHPSGYYAWKARPESERTKENRRLLGLIKQSWLESGGVYGYRKIAADLRDL 68 V C + V SG+YAW R +R EN +L + S+++S YG R++ DL Sbjct: 15 VALTCDTLGVSRSGFYAWLTRTPCKRRTENEQLGRAVHHSFIQSDRTYGARRVWHDLLAS 74 Query: 69 GERCGKHRVYRLMRTEGLKCQTGYRRRA---GRYGKPAV-IAPNHLQQKFDVPAPNLAWV 124 G RCG HRV RLM+ + L+ + RRR+ R +P + IA N L ++FD APN WV Sbjct: 75 GYRCGLHRVERLMQAQALRARP--RRRSLPIDRGERPVIGIAANVLDRQFDASAPNRKWV 132 Query: 125 TDITYIRTHEGWLYLAVVLDLFSRQVIGWSMGSRIDRNLAMDALLMAVWRRSPEQEVIVH 184 D TYI + EGWLYLAVVLDL+SR+VIGWSM ++ L DAL+MAVWRR + V+ H Sbjct: 133 ADFTYIWSAEGWLYLAVVLDLYSRRVIGWSMKPEMNAQLVADALMMAVWRRGKPESVMHH 192 Query: 185 SDQGSQFSSHDWQAFLKSHNLVPSMSRRGNCHDNAVAESFFQLLKRERIKRRIYADRNEA 244 SD+GSQ++S +Q L + SMSR GN DN+ ESFF LK ER+ R+++ R++ Sbjct: 193 SDRGSQYTSEQFQRLLLELGVTCSMSRAGNVWDNSAMESFFSSLKTERLSRKMFRTRDDI 252 Query: 245 RSDVFDYIEMFYNPKRRHSYSGNVSPVQFEQQ 276 R++VFDYIE FYNP RRHS G +SP+ FEQQ Sbjct: 253 RAEVFDYIERFYNPVRRHSTLGYISPIDFEQQ 284 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.136 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 565,016 Number of extensions: 22558 Number of successful extensions: 51 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 44 Number of HSP's successfully gapped: 10 Length of query: 284 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 203 Effective length of database: 733,452 Effective search space: 148890756 Effective search space used: 148890756 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 128 (53.9 bits)