BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3428.p (380 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093984|ref|YP_001099059.1| putative amino acid ABC transpo... 577 e-166 gi|134096411|ref|YP_001101486.1| putative branched chain amino a... 128 6e-31 gi|134095850|ref|YP_001100925.1| putative ABC-type branched-chai... 83 3e-17 gi|134093666|ref|YP_001098741.1| hypothetical protein HEAR0390 [... 55 4e-09 >gi|134093984|ref|YP_001099059.1| putative amino acid ABC transporter [Herminiimonas arsenicoxydans] Length = 381 Score = 577 bits (1487), Expect = e-166, Method: Compositional matrix adjust. Identities = 289/381 (75%), Positives = 332/381 (87%), Gaps = 1/381 (0%) Query: 1 MKLKCAILPLTAAIGMAFAGAAYAQE-VIKIAHVGPLSGPNAHMGKDNENGARMAVDELN 59 M+ K ++PL A+ A AG A AQE VIKI V P++G +AHMGKDNENGARMAV++LN Sbjct: 1 MQFKSKMIPLAGALAFALAGGAAAQEQVIKIGSVAPITGTDAHMGKDNENGARMAVEDLN 60 Query: 60 AKGFTIGGKKVKFELLGEDDASDPKQATAVATKLVDQKVAAVIGHLNSGTTIPASKIYSD 119 AKG TIGGKKVKF+LL EDDASDPKQATA A KLVD V AVIGHLNSGTTIPAS+IY++ Sbjct: 61 AKGTTIGGKKVKFQLLAEDDASDPKQATAAAQKLVDAGVVAVIGHLNSGTTIPASRIYAN 120 Query: 120 AGIPQVSPSATNPKYTQQGFKTTFRVVANDAQLGAALGKYAVQKLGTKQIAVIDDRTAYG 179 AGIPQVSPSATNPKYTQQGFKT FRVVANDAQLG LG+YAV+ LG K +AVIDDRTAYG Sbjct: 121 AGIPQVSPSATNPKYTQQGFKTAFRVVANDAQLGQVLGQYAVKTLGGKSVAVIDDRTAYG 180 Query: 180 QGVAQEFAKGAKAAGGTIVGTQFTNDKATDFNAILTSLKGKKPDVIFFGGMDAVGGPMLR 239 QGVA EFAKG KAAGG+IV +Q+TN+KATDFN+ILTS+K KKPD+IFFGGMDAVGGPMLR Sbjct: 181 QGVADEFAKGVKAAGGSIVASQYTNNKATDFNSILTSIKAKKPDIIFFGGMDAVGGPMLR 240 Query: 240 QMKQLGISAKFMGGDGICTGSLPGLAGDGLGDDQVVCAEAGGVDEAGKKGMDDFRAAYKK 299 QMKQLGI+AKFMGGDGICTGSLPGLAG LGD+QVVCAEAGGV EA +KG++DFRA+YKK Sbjct: 241 QMKQLGINAKFMGGDGICTGSLPGLAGTALGDNQVVCAEAGGVPEARRKGVEDFRASYKK 300 Query: 300 KFGIDVVYNAAYAYDATMTVADAMAKAGSADPKKYLPELAKISHKGVTGVIAFDAHGDVK 359 +FG++VVY AAYAYDAT V +AM KA S +P KYLPELAK ++ G+TG IAFDA GD+K Sbjct: 301 RFGVEVVYTAAYAYDATNAVVEAMKKANSWEPAKYLPELAKSNYPGITGTIAFDAKGDIK 360 Query: 360 DGSLTLYTYKGGQRTLLAVTK 380 DG+LTLYT++GG+R +LAVTK Sbjct: 361 DGTLTLYTFRGGKREMLAVTK 381 >gi|134096411|ref|YP_001101486.1| putative branched chain amino acid binding protein [Herminiimonas arsenicoxydans] Length = 390 Score = 128 bits (321), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 111/371 (29%), Positives = 172/371 (46%), Gaps = 25/371 (6%) Query: 22 AYAQEVIKIAHVGPLSGPNAHMGKDNENGARMAVDELNAKGFTIGGKKVKFELLGEDDAS 81 A A++V+KIA VGPL+G + +G N A +AV NA K +EL+ +DD Sbjct: 25 ASAKDVVKIAFVGPLTGGTSSIGLGGRNSADLAVRLRNADP----KAKYTYELVSQDDEC 80 Query: 82 DPKQATAVATKLV-DQKVAAVIGHLNSGTTIPASKIYSDAGIPQVSPSATNPKYTQ-QGF 139 P VATK+ D+ + A + H S + +Y+ G+P V A P+ T F Sbjct: 81 RPNVGVQVATKIAADKNIIAGVTHFCSAVAMGTVAVYNRFGLPVVVWGAVLPEITYGNNF 140 Query: 140 KTTFRVVANDAQLGAALGKYAVQKLGTKQIAVIDDRTAYGQGVAQEFAKGAKAAGGTIVG 199 K RV K+ + G K+ A+I D T YG+G + F++ K G T++G Sbjct: 141 KEVHRVNGTMINQSEVAAKFMADQ-GYKKFAIIHDTTDYGKGHNKYFSEFLKKNGATVLG 199 Query: 200 TQFTNDKATDFNAILTSLKGKKPDVIFFGGMDAVGGPMLRQMKQLGISAKFMGGDGICTG 259 T DF+ LT ++ KPDV++FGG+ +G + QM++LGI A+F G GI + Sbjct: 200 TFGVTADQQDFSTELTKIRELKPDVVYFGGLTPLGVRIRTQMEKLGIKAQFEGTSGIKSD 259 Query: 260 SLPGLAGDGLGDDQVVCAEAGGVDEAGKKGMDDFRAAY-KKKFGIDVVYNAAYAYDATMT 318 + G+ L + + E ++ G F A Y K+K+ ++Y A Sbjct: 260 AYIQGVGEKLAEGSLAFLEGAPWEKI--PGGLFFTAQYQKQKYSEPPEAYGTFSYAAANL 317 Query: 319 VADAMAKAGSADPKKYLPELAKISH-KGVTGVIAFDAHGD----------VKDGSLTLY- 366 + DA+ K G D KK L + + G + FD H V+DG ++ Sbjct: 318 IMDAVEKVGP-DRKKVRDVLNNTKNVDTLIGKVTFDDHRQNIVPLVTKYVVEDGKWAIWE 376 Query: 367 --TYKGGQRTL 375 +Y G+R L Sbjct: 377 DSSYASGKRKL 387 >gi|134095850|ref|YP_001100925.1| putative ABC-type branched-chain amino acid transport systems [Herminiimonas arsenicoxydans] Length = 397 Score = 82.8 bits (203), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 98/356 (27%), Positives = 148/356 (41%), Gaps = 16/356 (4%) Query: 3 LKCAILPLTAAIGMAFAGA--AYAQEVIK-IAHVGPLSGPNAHMGKDNENGARMAVDELN 59 L ++ + A++ +A AGA A+AQE I G +G A G E GA +A+DE+N Sbjct: 6 LSVKVMTIAASLMLA-AGAMSAHAQERKPCIGFSGAFTGAAAFSGLAVEMGAEVAIDEIN 64 Query: 60 AKGFTIGGKKVKFELLGEDDASDPKQATAVATKL-VDQKVAAVIGHLNSGTTIPASKIYS 118 AKG +G K L+ DDA P + ++ + A++G +SG + + Sbjct: 65 AKGGVLGQK---LSLVKYDDAGQPPKGVDNTRRVAMANNCIAILGGYHSGVALAQREAVE 121 Query: 119 DAGIPQVSPSATNPKYTQQGF---KTTFRVVANDAQLGAALGKYAVQKLGTKQIAVIDDR 175 GIP + A K + FRV A D + A L A+ K++A+ + Sbjct: 122 QIGIPYIGAFAAGTKIIEPDTGVNNWMFRVSAKDRWVAAYLSDVALAHSPGKKVAIFYEN 181 Query: 176 TAYGQGVAQEFAKGAKAAGGTIVGTQFTNDKATDFNAILTSLKGKKPDVIFFGGMDAVGG 235 T +G G A + +A G V + N D A L + + I G+D G Sbjct: 182 TGWGNGAAPDVKAALEARGVKPVAMETFNWGDQDMTAQLMRARDAGAEAIVMFGLDREGN 241 Query: 236 PMLRQMKQLGISAKFMGGDGIC--TGSLPGLAGDGLGDDQVVCAEAGGVDEAGKKGMDDF 293 +LR M +L G+ G L G +G+ Q + G D D Sbjct: 242 QILRGMDKLNYKPAIASAWGLAGNLGELAGPLANGVFVFQTF-SWMGKQDAKTAAVYDAL 300 Query: 294 RAAYKKKFGIDVVYNA--AYAYDATMTVADAMAKAGSADPKKYLPELAKISHKGVT 347 YK K D+ + A AYDA +A A+ AGS D K L + H+G+ Sbjct: 301 AKKYKLKAPADLKAGSGTANAYDAIHILAKAIEAAGSFDRVKVRDALFNVQHRGLV 356 >gi|134093666|ref|YP_001098741.1| hypothetical protein HEAR0390 [Herminiimonas arsenicoxydans] Length = 429 Score = 55.5 bits (132), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 64/217 (29%), Positives = 100/217 (46%), Gaps = 20/217 (9%) Query: 22 AYAQ-EVIKIAHVGPLSGPNAHMGKDNENGARMAVDELNAKGFTIGGKKVKFELLGEDDA 80 A+AQ + I+I + P G +G+ G +NA G IGG+KV EL+ +++ Sbjct: 33 AFAQNKPIRIGIIAPRGGVAGTIGECGLRGVEWTTARINAAG-GIGGRKV--ELVIQEET 89 Query: 81 SDPKQATAVATKLVDQ-KVAAVIGHLNSGTTIPASKIYSDAGIPQVSPSATNPKYTQQGF 139 S PK KLV Q KV V G ++SG ++ + D+ +P + T TQ G Sbjct: 90 S-PKDTIDRFRKLVLQEKVDCVQGIVSSGVSLALAPAAEDSRMPTIFWDGT----TQDGV 144 Query: 140 KTT-------FRVVANDAQ-LGAALGKYAVQKLGTKQIAVIDDRTAYGQGVAQEFAKGAK 191 K T FR N+ + + A+L K K+IA ++ +YG+ F K Sbjct: 145 KETMPKPKYVFRSTDNECEAVMASLLAIKHFKGKFKRIACVNPDYSYGRNTWTAFQALLK 204 Query: 192 AAG--GTIVGTQFTNDKATDFNAILTSLKGKKPDVIF 226 G +V Q++ D + + +LK KPD+IF Sbjct: 205 KYGIEHEVVSEQWSKIGNLDLTSNVAALKAAKPDLIF 241 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.315 0.133 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 673,309 Number of extensions: 26545 Number of successful extensions: 119 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 115 Number of HSP's successfully gapped: 5 Length of query: 380 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 297 Effective length of database: 726,862 Effective search space: 215878014 Effective search space used: 215878014 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)