BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3424.p (920 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096063|ref|YP_001101138.1| putative zinc protease [Hermini... 136 4e-33 gi|134096062|ref|YP_001101137.1| putative Zinc protease-like sig... 70 7e-13 >gi|134096063|ref|YP_001101138.1| putative zinc protease [Herminiimonas arsenicoxydans] Length = 427 Score = 136 bits (343), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 116/419 (27%), Positives = 199/419 (47%), Gaps = 27/419 (6%) Query: 56 FANGFKLLLLPDDSKPTVTVNITYLVGSRHENYGETGMAHLLEHLMFKGSPQHPAIPQEF 115 NG K+++ D PTV I Y GS E G TG AH LEH+MFKG+ + P EF Sbjct: 2 LKNGMKIIVNEDHRAPTVAHMIWYRTGSVDERNGTTGTAHALEHMMFKGTKKLK--PGEF 59 Query: 116 SKR----GMNFNGTTCLDRTNYYESFQAGQDNLQWAIAMEADRMVNSKIARKDLDSEMTV 171 SKR G N T D T Y++ + + L+ +A+EADRMVN + + + E+ V Sbjct: 60 SKRVAQLGGRENAFTSRDYTAYFQQIE--KSKLEAVMALEADRMVNLQFDKTEFAKEIRV 117 Query: 172 VRNEYEA-GETSPARVMLKRMQSVAYDWHSYGRNTIGARSDIENVRIENLQAFYRTYYQP 230 + E + P ++ + + + AY H Y IG D++++ + +++A++ +Y P Sbjct: 118 IMEERRLRTDDQPIAMVQEALAATAYAAHPYRNPVIGWMDDLQHMTVGDVKAWHDAWYAP 177 Query: 231 DNAVLIIAGKFEPRQVLQWVNQSFGRLPKP--KRKLPVFWTVEPTQDGERQFTIRRRGDL 288 +NA ++++G + RQV + FGR P+ R P EP Q G ++ T++ + Sbjct: 178 NNATMVVSGDVDARQVHALAEKYFGRYPQKTLTRTRP---QNEPPQLGIKRVTVKAPAEN 234 Query: 289 QLVALGYKMPS----ALHPDATALAFASDILTDTPNGRLHKSLVQTGLATEVYAMPLAGY 344 V L +K+P+ A DA AL S +L N RL LV+T +G Sbjct: 235 PYVVLAFKVPALRDIARDDDAFALDVLSAVLDGYDNARLAAKLVRTDRVANDVGASYSGI 294 Query: 345 A--PGLQLIVAKLKAGADIEPVKQAMIATVESFSSNPPTAEEMARLRRE----SANNFET 398 A P + L+ AG E +++ + A + ++ + E+ R++ + ++ Sbjct: 295 ARGPVMFLLDGVPAAGTTTEQLEKHLRAEITRIATEGVSETELKRVKTQLIAGQIYKRDS 354 Query: 399 LQNNPQQMAVAMSNAIARSDWRLLFIERDLEQRLSSADIATAAGKYFRRDNRTVGLYIP 457 + ++ + ++ D L+ IER + ++ + + A KYF D TV +P Sbjct: 355 VFGQAMEIGSMEMSGLSYKDIDLI-IER--LRAVTPQQVQSVAQKYFGDDALTVATLLP 410 Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 100/422 (23%), Positives = 176/422 (41%), Gaps = 57/422 (13%) Query: 519 LLPKQSRGQTVSVSMNLEFGDADSLFGQRAVAQLTAAMLMRGTSTLDRRQLADEFTRLKI 578 ++ + R TV+ + G D G A M+ +GT L + + +L Sbjct: 9 IVNEDHRAPTVAHMIWYRTGSVDERNGTTGTAHALEHMMFKGTKKLKPGEFSKRVAQLGG 68 Query: 579 NGNV--------YRFQTTRENLNAAIALAGEVLRHPRMDPAEFAQLKNETVAALEATRKE 630 N Y Q + L A +AL + + + + D EFA+ E +E R Sbjct: 69 RENAFTSRDYTAYFQQIEKSKLEAVMALEADRMVNLQFDKTEFAK---EIRVIMEERRLR 125 Query: 631 PDARAAEALQ---------LHFDHYPAGDWRAARTLEERIAAVQAVTLEQVQAFHRRFYG 681 D + +Q H P W + +Q +T+ V+A+H +Y Sbjct: 126 TDDQPIAMVQEALAATAYAAHPYRNPVIGW---------MDDLQHMTVGDVKAWHDAWYA 176 Query: 682 ASHGEVAIVGDFDAQAARSAIDQAFAGWSSAAPYARILRTWSDIAP-----KRILIDTPD 736 ++ + + GD DA+ + ++ F + P + RT P KR+ + P Sbjct: 177 PNNATMVVSGDVDARQVHALAEKYFGRY----PQKTLTRTRPQNEPPQLGIKRVTVKAPA 232 Query: 737 KENGVYLARQNLRLRD---DDPDYATLVVANYLLGASS--LKSRL--GDRVRQQDGLSYG 789 + V LA + LRD DD +A V++ L G + L ++L DRV G SY Sbjct: 233 ENPYVVLAFKVPALRDIARDDDAFALDVLSAVLDGYDNARLAAKLVRTDRVANDVGASY- 291 Query: 790 INSGLQIGAISDAGYLVIHAIAAPQNMDKVDAAVREELDRLLKDGFSEDELLRAKSGILQ 849 SG+ G + +L+ AA ++++ +R E+ R+ +G SE EL R K+ ++ Sbjct: 292 --SGIARGPVM---FLLDGVPAAGTTTEQLEKHLRAEITRIATEGVSETELKRVKTQLIA 346 Query: 850 QRNQQRSSDGGMATGWTALLNLDRSFLWQQQLDL---KLADLTLAQLNAAVRKYIDPARM 906 + +R S G A + +++ S L + +DL +L +T Q+ + +KY + Sbjct: 347 GQIYKRDSVFGQA---MEIGSMEMSGLSYKDIDLIIERLRAVTPQQVQSVAQKYFGDDAL 403 Query: 907 TV 908 TV Sbjct: 404 TV 405 >gi|134096062|ref|YP_001101137.1| putative Zinc protease-like signal peptide protein [Herminiimonas arsenicoxydans] Length = 436 Score = 69.7 bits (169), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 112/415 (26%), Positives = 182/415 (43%), Gaps = 61/415 (14%) Query: 529 VSVSMNLEFGDADSLFGQRAVAQLTAAMLMRG--------TSTLDRRQLADEFT------ 574 + VS++ + G G+ A LT AML RG + Q++D F Sbjct: 45 LDVSVDFDAGSRRDPVGKSGTAALTNAMLARGLRAAQNPNEPAIGEAQISDAFADVAAQR 104 Query: 575 --RLKINGNVYRFQTTRENLNAAIALAGEVLRHPRMDPAEFA-QLKNETVAALEATRKEP 631 RL + + +T A+AL +L P P EF + K TVA ++ + +P Sbjct: 105 GARLDDDRSGVTLRTLASEREMALALLARLLAQPSF-PQEFLLRDKARTVATIKESLTQP 163 Query: 632 DARAAEAL-QLHFDHYPAGDWRAARTLEERIAAVQAVTLEQVQAFHRRFYGASHGEVAIV 690 +A A +A +L + +P G A T+E ++ A+T + + +FH +Y A+ VA++ Sbjct: 164 EAIADKAFARLLYGTHPYG---AQPTVE----SITAITRDDLLSFHAAYYVANRAVVALI 216 Query: 691 GDFD-AQAARSAID--QAFAGWSS-----AAPYA--RILRTWSDIAPKRILIDTPDKENG 740 GD A A R A+ Q ++ A P A R R IL+ P Sbjct: 217 GDITRADADRIALQLTQRLPQGAALPDLPAVPAAQGREERIPHQATQAHILLGMP----- 271 Query: 741 VYLARQNLRLRDDDPDYATLVVANYLLGASSLKSRLGDRVRQQDGLSYGINSGLQIGAIS 800 LAR DPD+ L V NY+LG SRL +VR++ GL+YG++S ++ Sbjct: 272 -ALARH-------DPDHFALTVGNYVLGGGGFASRLMQQVREKRGLTYGVSS--YFNPMA 321 Query: 801 DAGYLVIHAIAAPQNMDKVDAAVREELDRLLKDGFSEDELLRAKSGI-----LQQRNQQR 855 AG I + + R+ L L++G S EL AK + L+ + ++ Sbjct: 322 QAGPFQIGLQTKKEQAGEALKVTRDTLADYLREGPSAAELKAAKDNLTGSFALRIDSNRK 381 Query: 856 SSDGGMATGWTALLNLDRSFLWQQQLDLKLADLTLAQLNAAVRKYIDPARMTVVM 910 + A G+ L LD W + K+A +T+AQ+ AA + + + + V+ Sbjct: 382 ILENIAAIGFYQ-LPLDYLNTW----NAKIAAVTVAQVKAAFNRKLQLDKFSTVI 431 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.132 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,678,443 Number of extensions: 69917 Number of successful extensions: 239 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 232 Number of HSP's successfully gapped: 3 Length of query: 920 Length of database: 1,000,347 Length adjustment: 90 Effective length of query: 830 Effective length of database: 703,797 Effective search space: 584151510 Effective search space used: 584151510 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)