BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3420.p
         (489 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095761|ref|YP_001100836.1| putative outer membrane transpo...    65   1e-11

>gi|134095761|ref|YP_001100836.1| putative outer membrane transport
           protein involved in copper (silver) tolerance (cusC)
           [Herminiimonas arsenicoxydans]
          Length = 502

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 110/423 (26%), Positives = 187/423 (44%), Gaps = 43/423 (10%)

Query: 74  LGDAIDLGLCHHAQVKASWARIKVQAAQKGEARAAYLPSINAGLRYQQERVRQPDSLLPL 133
           L D I   L ++  ++A+  R++   A  G  RA   P+I A  +   ER   P  L  L
Sbjct: 75  LQDLIAQALENNRDLRAAVLRVEEARAAYGIQRAEQFPAIAA--QAGSERAHVPADL-SL 131

Query: 134 DSQRKTRSQYYT----LTWRLLDFGGRSANLRAADALLDAALASHDAILQKTMTSVIAAY 189
             +    SQY+      +W + DF GR  +LR  DA L+  LAS +A    T++ V    
Sbjct: 132 TGKPAMSSQYHVSLGLASWEI-DFWGRVRSLR--DAALENYLASDEARRAVTISLV---- 184

Query: 190 YDVQTAAANRQARELNERLA---------RQIMETTHKRAERGMAARSDLLQVQTSLSKA 240
              Q A +     EL+ER+A          + +    +R E G  +R +L QVQT LS+A
Sbjct: 185 --AQVANSYLALCELDERIALARLTIASREESLRIFTRRVEVGSTSRLNLTQVQTLLSQA 242

Query: 241 E-----LEHARAIGQHEKALVTLSISLGLRGQGPHLQVPIDSPDSAIEAGQIAQDLVQWM 295
           +     LE ARA+     AL+ L         G  L++P  S  S ++  Q+   L   +
Sbjct: 243 QALGAQLEQARAL--QANALILLV--------GVTLELPATS--SRLDERQMLLPLQPGL 290

Query: 296 ET-ARQQHPALRASRAQLASSREKLAATRAEGLPSLDFSHGYYVNGRPNQGSASTQTRET 354
            +    + P + A+  QL ++  ++ A RA   P +  +  +        G  +  +R  
Sbjct: 291 PSDLLIRRPDIVAAEHQLKAAHAQIGAARAAFFPRIALTGSFGTASAELDGLFAAGSRAW 350

Query: 355 VSALSLNFPLFDGFSHTYKVRNAQAQIDLREAELLEAEGQVISELANAYAENEAAQRNLV 414
             A S++ PLFD    +  +  A+A+ DL  A   +       ++A+A A  +   + L+
Sbjct: 351 TFAPSISLPLFDAGRRSNNLSLAEARRDLAVANYEKTIQAAFRDVADALAARQWLAQQLL 410

Query: 415 SSQRLLDSAKMALEDVQRKYERGLSDIIGILNVQAALADASQERIRALAEWRSARLRLLA 474
            +Q  L +        Q +Y+ G +  + +L+ Q  L  A Q+ ++      S+++ L A
Sbjct: 411 IAQAALTTQTERARLSQLRYDNGAAAYLDVLDAQRDLLVAEQQLVQIRRALLSSQVSLYA 470

Query: 475 SAG 477
           + G
Sbjct: 471 ALG 473


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.129    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 798,708
Number of extensions: 29068
Number of successful extensions: 134
Number of sequences better than 1.0e-08: 7
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 7
Length of query: 489
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 404
Effective length of database: 720,272
Effective search space: 290989888
Effective search space used: 290989888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)