BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3418.p (720 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093506|ref|YP_001098581.1| ABC transporter ATP-binding pro... 279 4e-76 gi|134096472|ref|YP_001101547.1| putative ABC transporter [Hermi... 276 2e-75 gi|134094288|ref|YP_001099363.1| putative ABC transporter permea... 252 4e-68 gi|134093728|ref|YP_001098803.1| lipid ABC transporter membrane/... 229 3e-61 gi|134096161|ref|YP_001101236.1| ABC transporter ATP-binding pro... 226 4e-60 >gi|134093506|ref|YP_001098581.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 648 Score = 279 bits (713), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 196/587 (33%), Positives = 317/587 (54%), Gaps = 20/587 (3%) Query: 146 FIPAVIKYRKALGEVLLISLALQLIGLCTPLFFQVVMDKVLVNHAM-KTLNVIAIGLI-- 202 IP + Y+ + LL +A + + PL + ++D + ++ A L V+ +G++ Sbjct: 46 LIPYLWTYKWRVALALLFLIAAKFANVGVPLVLKRLIDGLTIDPASPHALLVLPVGILFA 105 Query: 203 --AATLFEAILGGIRTALFSHTSSKIDVELGSKLFAHLLSLPITYFQSRRAGDSIARI-R 259 A L + +R F+ + + + ++F HL +L + + +R+ G I R Sbjct: 106 YGALRLSTTLFTELREYTFAKVTQRAVRTIALQVFRHLHALSLRFHLNRQTGGMTRDIER 165 Query: 260 ELENIRSFLTSNAMTLLLDLVFSFVFLGVM-LWYSVTLSLIVLASIPLYLGLSFVFTPI- 317 I S ++ ++L LV + LG + L Y + S+I ++ Y+ + V T Sbjct: 166 GTRGISSLVSYTLFSILPTLVEITLVLGYLVLHYDIWFSIITAVALVSYIAFTVVVTEWR 225 Query: 318 --LRARLDDKFNKSAENQAFLVESLTGMDTIKSLAVEPRWQQKWDKQLAAYVSAGL-STA 374 R ++D + A +A ++SL +T+K E +++D+ L Y +A + S Sbjct: 226 THFRRTMND-LDSKANTKA--IDSLINYETVKYFGNEDYEAKRYDEGLKRYETAAVKSQT 282 Query: 375 NIGLLASGSVSLVSKLVTAAIMWLGATLVIDQQLTVGELVAFNMLAGQVAAPVLRLAQLW 434 ++ +L +G S+++ VT I+W VI +T+G+LV N Q+ P+ L ++ Sbjct: 283 SLSVLNTGQSSIIAVAVTL-ILWRATQGVISGTMTLGDLVLVNAFMIQLYIPLNFLGVIY 341 Query: 435 NDFQQVGISMSRLGDVLDTRPEVTGK-KTRLPRLSGA-IIFDQVSFRYRPETSEVLRALT 492 + +Q M RL +LD E+ K T+ + GA + F V F Y + ++L + Sbjct: 342 REIKQSLADMERLFSLLDQHREIADKPNTQALVVQGAEVKFSHVGFSYEAK-RQILFDVD 400 Query: 493 LNIRPGEVVGIVGRSGSGKSTLTKLVQRLYVCDRGKVMIDGQDLAVIDTASLRQQIGVVL 552 I G +VG SGSGKSTL++L+ R Y + G ++IDGQD+ + ASLR IG+V Sbjct: 401 FTIAAGTTTAVVGHSGSGKSTLSRLLFRFYDVNEGAILIDGQDVRDVTQASLRNAIGIVP 460 Query: 553 QENMLFSRSIRDNIALTDPSLPIEAVIAAAKLAGAHEFICELPEAYDTLVGEHGTGLSGG 612 Q+ +LF+ +I NIA P + ++AAAK A H+FI LP+ Y T+VGE G LSGG Sbjct: 461 QDTVLFNDTIEYNIAYGKPGASKDDIVAAAKSAYIHDFIESLPDGYATMVGERGLKLSGG 520 Query: 613 QRQRIAIARALISNPAILIFDEATSALDYESEKIIQDNMRQICAGRTVLIIAHRLSAVRD 672 ++QR+AIAR L+ +PAILIFDEATSALD ++E+ IQ +++I RT ++IAHRLS + D Sbjct: 521 EKQRVAIARTLLKHPAILIFDEATSALDSKAEQAIQAQLKEIAKDRTTMVIAHRLSTIVD 580 Query: 673 AHRIIVLDKGQIVESGRHEELLRKPGGLYAHLHGLQMT-QGAASTSP 718 A +I+VLD G+IVE G H +LL G YA + Q Q + SP Sbjct: 581 AAQILVLDHGRIVERGTHAQLLAADGA-YAQMWARQQARQDESPASP 626 >gi|134096472|ref|YP_001101547.1| putative ABC transporter [Herminiimonas arsenicoxydans] Length = 726 Score = 276 bits (707), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 187/540 (34%), Positives = 290/540 (53%), Gaps = 13/540 (2%) Query: 172 LCTPLFFQVVMDKVLVNHAM-----KTLNVIAI-GLIAATLFEAILGGIRTALFSHTSSK 225 L P +MD VL+ + +L V+ + GL + + LG RT + + S + Sbjct: 166 LVPPYMTLPLMDNVLIPYQNGVEIDSSLVVLYLSGLFGSAVLAWGLGWARTYILALVSER 225 Query: 226 IDVELGSKLFAHLLSLPITYFQSRRAGDSIARI-RELENIRSFLTSNAMTLLLDLVFSFV 284 I +L + + HLL L + YF +R GD + RI E + I FL+ + + D++ + Sbjct: 226 IGADLRTTTYEHLLRLSLEYFGGKRTGDLMTRIGSETDRICVFLSLHLLDFFTDVLMIIM 285 Query: 285 FLGVMLWYSVTLSLIVLASIPLYLGLSFVFTPILRARLDDKFNKSAENQAFLVESLTGMD 344 +++ + L+L+ L +P + V LR + ++ L +++ G+ Sbjct: 286 TAAILISINPWLALVTLLPLPFIAWMIHVVRDKLRNGFEKIDRIWSQVTNVLADTIPGIR 345 Query: 345 TIKSLAVEPRWQQKWDKQLAAYVSAGLSTANIGLLASGSVSLVSKLVTAAIMWLGATLVI 404 +K+ A E R ++ + ++ + L S +V+L++++ + LG V Sbjct: 346 VVKAFAQEKREAVRFREANKHNLAINDRVNKVWSLFSPTVTLLTEIGLLVVWALGIWQVS 405 Query: 405 DQQLTVGELVAFNMLAGQVAAPVLRLAQLWNDFQQVGISMSRLGDVLD---TRPEVTGKK 461 +TVG L AF + + ++++ + Q+ R+ D+LD + PE T Sbjct: 406 QGLITVGVLTAFLAYITRFYTRLDSMSRIVSVTQKAATGAKRIFDILDHVSSVPEAT-NP 464 Query: 462 TRLPRLSGAIIFDQVSFRYRPETSEVLRALTLNIRPGEVVGIVGRSGSGKSTLTKLVQRL 521 L + G I + FRY V+R L L+I+PGE++G+VG SGSGKSTL L+ R Sbjct: 465 VHLTNVQGKITIKNIGFRY--GNRAVIRGLDLDIQPGEMIGLVGHSGSGKSTLVNLICRF 522 Query: 522 YVCDRGKVMIDGQDLAVIDTASLRQQIGVVLQENMLFSRSIRDNIALTDPSLPIEAVIAA 581 Y G +++DG D+ I R+ IG+VLQE LF +I DNIA P E +IAA Sbjct: 523 YDVSDGAILVDGIDVRSIPIPEYRRNIGLVLQEPFLFFGTIADNIAYGKPDASREEIIAA 582 Query: 582 AKLAGAHEFICELPEAYDTLVGEHGTGLSGGQRQRIAIARALISNPAILIFDEATSALDY 641 A+ A AHEFI LP YD++VGE G LSGG+RQRI+IARAL+ +P ILI DEATS++D Sbjct: 583 ARAANAHEFILRLPHGYDSMVGERGQTLSGGERQRISIARALLIDPHILILDEATSSVDT 642 Query: 642 ESEKIIQDNMRQICAGRTVLIIAHRLSAVRDAHRIIVLDKGQIVESGRHEELLRKPGGLY 701 +E+ IQ + + GRT + IAHRLS +R A RI+V+D+GQIVE G H+ELL + G Y Sbjct: 643 TTEREIQKALDNLVRGRTTIAIAHRLSTLRRADRIVVMDRGQIVEVGSHDELLAREGAYY 702 >gi|134094288|ref|YP_001099363.1| putative ABC transporter permease [Herminiimonas arsenicoxydans] Length = 579 Score = 252 bits (644), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 178/535 (33%), Positives = 290/535 (54%), Gaps = 18/535 (3%) Query: 189 HAMKTLNVIAIGLIAATLFEAILGGIRTALFSHTSSKIDVELGSKLFAHLLSLPITYFQS 248 H ++N + L A+ R + S ++ ++ + +++H+++ +F++ Sbjct: 50 HDTGSINTYFLALFGVACILALATAARFYMVSWLGERVTADVRNAVYSHVVTQSPQFFET 109 Query: 249 RRAGDSIARIRELENIRSFLTSNAMTLLLDLVFSFVFLGVMLWY-SVTLSLIVLASIPLY 307 ++G+ ++R+ + L ++++ L F VML+ S+ LS I+L + Sbjct: 110 TQSGEVLSRLTTDTTLIQTLIGTSISMALRNTLLFAGGLVMLFVTSIKLSSIILVMLIAT 169 Query: 308 LGLSFVFTPILRARLDDKFNKSAENQAFLVESLTGMDTIKSLAVEPRWQQKWDKQLAAYV 367 + F +R+ ++ A++ A E L M T+++ E +++ K V Sbjct: 170 VLPIVWFGRRVRSLSRASQDRVADSSALAGEILNAMPTVQAFTHEKIESERFSKT----V 225 Query: 368 SAGLSTANIGLLASGSVSLVSKLVTAA----IMWLGATLVIDQQLTVGELVAFNMLAGQV 423 TA + A +++++ L+ ++WLGA VID ++ GEL F + + V Sbjct: 226 EDAFKTAMRRIRARSLLTMIAILLIFGAIVFVLWLGAHAVIDGTMSGGELGQFILYSAIV 285 Query: 424 AAPVLRLAQLWNDFQQVGISMSRLGDVLDTRPEVTGKKTRLP----RLSGA-IIFDQVSF 478 A + L+++ D Q+ + RL ++L + ++ LP R +G+ + D VSF Sbjct: 286 AGAIGALSEVVGDAQRAAGATERLLELLAVQSPISSPAVPLPLPPRRANGSSLALDLVSF 345 Query: 479 RY--RPETSEVLRALTLNIRPGEVVGIVGRSGSGKSTLTKLVQRLYVCDRGKVMIDGQDL 536 Y RP T + ++ I+ GE V +VG SG+GK++L +L+ R Y G + +DG D+ Sbjct: 346 YYPSRPLTPAI-SNFSIAIKAGETVAVVGPSGAGKTSLFQLLLRFYDPQEGVIELDGVDI 404 Query: 537 AVIDTASLRQQIGVVLQENMLFSRSIRDNIALTDPSLPIEAVIAAAKLAGAHEFICELPE 596 +D +LR IG+V Q+ ++FS + +NI P E VIA AK+A AHEFI LPE Sbjct: 405 RQLDLHALRNTIGIVPQDTVIFSANAMENIRYGRPDASDEEVIAVAKMAAAHEFIDRLPE 464 Query: 597 AYDTLVGEHGTGLSGGQRQRIAIARALISNPAILIFDEATSALDYESEKIIQDNMRQICA 656 Y + +GE G LSGGQRQRIAIARAL+ NP +L+ DEATSALD ESE+++Q + Sbjct: 465 GYQSFLGERGVRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQSALEAAMV 524 Query: 657 GRTVLIIAHRLSAVRDAHRIIVLDKGQIVESGRHEELLRKPGGLYAHLHGLQMTQ 711 GRT L+IAHRL+ V+ AHRIIV++ G IVE+G H L+ GGLYA L LQ Q Sbjct: 525 GRTTLVIAHRLATVQRAHRIIVMEHGHIVETGTHASLV-AAGGLYASLAALQFGQ 578 >gi|134093728|ref|YP_001098803.1| lipid ABC transporter membrane/ATP-binding protein [Herminiimonas arsenicoxydans] Length = 581 Score = 229 bits (585), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 182/562 (32%), Positives = 289/562 (51%), Gaps = 22/562 (3%) Query: 165 LALQLIG-----LCTPLF---FQVVMDKVLVNHAMKTLNVIAIGLIAATLFEAILGGIRT 216 LA+ IG L P+F ++++DK +L ++ + +I + I T Sbjct: 21 LAVAFIGMIMTALTEPMFPAVMRLLLDKGFGGKPTFSLWLVPLAIIGIFVLRGISTFTTT 80 Query: 217 ALFSHTSSKIDVELGSKLFAHLLSLPITYFQSRRAGDSI-ARIRELENIRSFLTSNAMTL 275 + SS++ L K+F +L +P+ ++ + G I + + E++ I +T ++ Sbjct: 81 YTMTWVSSRLLSTLRKKMFERILDVPLGFYGTHSVGRVINSMMFEVQQIIEMITKVYTSI 140 Query: 276 LLDLVFSFVFLGVMLWYSVTLSLIVLASIPLYLGLSFVFTPILRARLDDKFNK-SAENQA 334 + D + V L + W + L+L+ L +PL + + FT RL ++ +AE Sbjct: 141 IRDSLTVIVLLAFLFWLNWRLTLVALVLLPL-IAIVVRFTGKRVRRLTREYQAVNAEMTQ 199 Query: 335 FLVESLTGMDTIKSLA----VEPRWQQKWDKQLAAYVSAGLSTANIGLLASGSVSLVSKL 390 + ES IK R++ + DK L +Y ST L A+ V+ + Sbjct: 200 VIEESTRANQVIKIFGGHQYENDRFEVRADK-LRSYTMRMAST----LAATTPVTQIMAS 254 Query: 391 VTAAIMWLGATLVIDQ-QLTVGELVAFNMLAGQVAAPVLRLAQLWNDFQQVGISMSRLGD 449 AI+ + A + +Q Q TVG V+F + AP+ +A++ Q+ + + Sbjct: 255 CAVAIVIVIALIQSEQNQTTVGGFVSFITAMLMLLAPLKNIAEVNGPLQKGLTAAEAVFG 314 Query: 450 VLDTRPEVTGKKTRLPRLSGAIIFDQVSFRYRPETSEVLRALTLNIRPGEVVGIVGRSGS 509 ++D +PE T KT R +G + F + F Y S L + L++ PGE + VG SG Sbjct: 315 LIDAKPERTSGKTLEARAAGKLDFINLGFSYPGHQSMALEDINLSVLPGETIAFVGMSGG 374 Query: 510 GKSTLTKLVQRLYVCDRGKVMIDGQDLAVIDTASLRQQIGVVLQENMLFSRSIRDNIALT 569 GKSTL LV Y G++ +D + I SLR+QI +V Q +LF +I NIA Sbjct: 375 GKSTLVNLVPGFYPATVGEIRLDDVPIEEIALTSLRRQIAMVSQHVVLFDDTIAANIAYG 434 Query: 570 DPSLPIEAVIAAAKLAGAHEFICELPEAYDTLVGEHGTGLSGGQRQRIAIARALISNPAI 629 D + ++AAA A + I LP+ +T++G++G+ LSGGQRQR+AIARA+ + I Sbjct: 435 DETPDRARILAAATAAHLDDVIAGLPQGLETMIGDNGSRLSGGQRQRLAIARAIYKDAPI 494 Query: 630 LIFDEATSALDYESEKIIQDNMRQICAGRTVLIIAHRLSAVRDAHRIIVLDKGQIVESGR 689 LI DEATSALD ESE+ +Q + + GRT L+IAHRLS + A RI VL +G+IVE G Sbjct: 495 LILDEATSALDSESERAVQAALDALMKGRTTLVIAHRLSTIERADRIAVLAEGRIVELGS 554 Query: 690 HEELLRKPGGLYAHLHGLQMTQ 711 H+ELL K +YA+L+ LQ + Sbjct: 555 HQELLEK-NAVYANLYHLQFAK 575 >gi|134096161|ref|YP_001101236.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 618 Score = 226 bits (575), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 125/250 (50%), Positives = 161/250 (64%), Gaps = 7/250 (2%) Query: 464 LPRLSGAIIFDQVSFRYRPETSEVLRALTLNIRPGEVVGIVGRSGSGKSTLTKLVQRLYV 523 L + G + FD V F Y T V+ L IRPGE VG+VGRSG+GKST+ L+ R Y Sbjct: 353 LQVMRGELKFDHVGFAY-GGTRAVIDQFNLTIRPGEKVGLVGRSGAGKSTIVNLLLRFYD 411 Query: 524 CDRGKVMIDGQDLAVIDTASLRQQIGVVLQENMLFSRSIRDNIALTDPSLPIEAVIAAAK 583 ++G+++IDGQD+A + SLR Q+G+V Q+ L RS+RDNI P +I AAK Sbjct: 412 LEQGRILIDGQDIAHVTQNSLRAQVGMVTQDTSLLHRSVRDNILYGRPDASEADMIDAAK 471 Query: 584 LAGAHEFICELPEA-----YDTLVGEHGTGLSGGQRQRIAIARALISNPAILIFDEATSA 638 A AH+FI L +A YD VGE G LSGGQRQRIAIAR ++ + IL+ DEATSA Sbjct: 472 RAEAHDFILTLSDAKGRTAYDAHVGERGVKLSGGQRQRIAIARVMLKDAPILLLDEATSA 531 Query: 639 LDYESEKIIQDNMRQICAGRTVLIIAHRLSAVRDAHRIIVLDKGQIVESGRHEELLRKPG 698 LD E E IQ ++ ++ G+TV+ IAHRLS + R+IVLDKG+IVE G H ELL++ Sbjct: 532 LDSEVEAAIQTSLYELMEGKTVVAIAHRLSTIAAMDRLIVLDKGRIVEQGSHRELLQQ-N 590 Query: 699 GLYAHLHGLQ 708 GLYA L Q Sbjct: 591 GLYARLWAHQ 600 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.324 0.138 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,250,419 Number of extensions: 48321 Number of successful extensions: 377 Number of sequences better than 1.0e-08: 40 Number of HSP's gapped: 328 Number of HSP's successfully gapped: 41 Length of query: 720 Length of database: 1,000,347 Length adjustment: 88 Effective length of query: 632 Effective length of database: 710,387 Effective search space: 448964584 Effective search space used: 448964584 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 132 (55.5 bits)