BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3411.p (110 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096455|ref|YP_001101530.1| arsR operon regulator ArsI [Her... 148 6e-38 gi|134093761|ref|YP_001098836.1| arsenical resistance transcript... 136 2e-34 gi|134096360|ref|YP_001101435.1| ArsR family transcriptional reg... 132 6e-33 gi|134095162|ref|YP_001100237.1| ArsR transcriptional regulator ... 103 2e-24 >gi|134096455|ref|YP_001101530.1| arsR operon regulator ArsI [Herminiimonas arsenicoxydans] Length = 117 Score = 148 bits (374), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 69/100 (69%), Positives = 82/100 (82%) Query: 1 METKTVITALAALAQESRLAIFRHLVQLGPEGCAASKIGETLDIAPSSVSFHMKELSHAG 60 METKT I +L+ALA ESRLA+FR LVQ GP G AASKI E L I PSS+SFH+KELSHAG Sbjct: 1 METKTAIISLSALAHESRLAVFRLLVQAGPSGLAASKISENLGIPPSSLSFHLKELSHAG 60 Query: 61 LVSSRQEGRFVIYVANYGAMNEVLGFLTDNCCGGNPCSPV 100 LVS Q+GRF+ Y AN+ AMN ++ F+T+NCCGGNPC+PV Sbjct: 61 LVSGTQDGRFIHYAANFDAMNGLIAFMTENCCGGNPCAPV 100 >gi|134093761|ref|YP_001098836.1| arsenical resistance transcriptional regulator [Herminiimonas arsenicoxydans] Length = 111 Score = 136 bits (343), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 67/103 (65%), Positives = 86/103 (83%) Query: 1 METKTVITALAALAQESRLAIFRHLVQLGPEGCAASKIGETLDIAPSSVSFHMKELSHAG 60 M+TK + AL+ALAQESRL++FR LVQ+GP+G AA+KIGE L I+PSS+SFH+KEL+HA Sbjct: 1 MDTKATLAALSALAQESRLSVFRLLVQVGPQGMAATKIGEQLGISPSSMSFHLKELAHAE 60 Query: 61 LVSSRQEGRFVIYVANYGAMNEVLGFLTDNCCGGNPCSPVSAC 103 LV+++ EGRFVIY AN+ MN ++GFLT+NCCGGN CSP C Sbjct: 61 LVTAKHEGRFVIYSANFVVMNALVGFLTENCCGGNVCSPNGVC 103 >gi|134096360|ref|YP_001101435.1| ArsR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 112 Score = 132 bits (331), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 62/101 (61%), Positives = 77/101 (76%) Query: 1 METKTVITALAALAQESRLAIFRHLVQLGPEGCAASKIGETLDIAPSSVSFHMKELSHAG 60 M V+ AL ALAQE+RL+ FR LVQ GP G +AS+I + + IAPS +SFH+KEL HAG Sbjct: 1 MTPTVVVAALGALAQETRLSAFRLLVQAGPAGLSASQIADGVGIAPSLLSFHLKELLHAG 60 Query: 61 LVSSRQEGRFVIYVANYGAMNEVLGFLTDNCCGGNPCSPVS 101 LV+ +EGR +IY A + AMN +LG+LTDNCCGGNPCSP S Sbjct: 61 LVTQVREGRSLIYAAEFDAMNALLGYLTDNCCGGNPCSPTS 101 >gi|134095162|ref|YP_001100237.1| ArsR transcriptional regulator [Herminiimonas arsenicoxydans] Length = 107 Score = 103 bits (258), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 49/104 (47%), Positives = 69/104 (66%) Query: 1 METKTVITALAALAQESRLAIFRHLVQLGPEGCAASKIGETLDIAPSSVSFHMKELSHAG 60 M ++AL+ALA RL +FR LV GPEG S + + LD+A +++SFH+KEL+HAG Sbjct: 1 MNEDQAVSALSALAHTQRLRVFRALVVAGPEGLTPSVLADQLDVARNTLSFHLKELAHAG 60 Query: 61 LVSSRQEGRFVIYVANYGAMNEVLGFLTDNCCGGNPCSPVSACR 104 LVS Q+GR +IY A Y MN ++G+LT++CC G C + R Sbjct: 61 LVSIEQQGRNLIYRAEYDHMNGLIGYLTEHCCQGGVCEVSESTR 104 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.131 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 187,732 Number of extensions: 6284 Number of successful extensions: 26 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 26 Number of HSP's successfully gapped: 4 Length of query: 110 Length of database: 1,000,347 Length adjustment: 69 Effective length of query: 41 Effective length of database: 772,992 Effective search space: 31692672 Effective search space used: 31692672 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 122 (51.6 bits)