BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3408.p
         (176 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093439|ref|YP_001098514.1| putative chromate transporter [...    78   3e-16

>gi|134093439|ref|YP_001098514.1| putative chromate transporter
           [Herminiimonas arsenicoxydans]
          Length = 194

 Score = 77.8 bits (190), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 80/155 (51%), Gaps = 11/155 (7%)

Query: 28  PEMQRQVVEVHHWMSAEDFSALFALGQAAPGPNLMVVTLVGWHVA--------GFWGMLV 79
           PEM R +V   HW++   FS    + QAAPGPN++ V L+GW+V         G  GM +
Sbjct: 37  PEMHRYLVSEQHWLTDPQFSNSITIAQAAPGPNILFVALMGWNVGLNAGGMANGLLGMAL 96

Query: 80  TSLAKFGPSSIITVIMLHVWERFKDKPWRRHVQAGLLPVTGGLVAASALLI--TQASITH 137
             +    PS++ T +      R +     R  + G+ PV  GLV A+  ++  TQ +   
Sbjct: 97  CMVGLLLPSTVFTYMATRWVHRNRQLRAVRAFKLGMGPVVVGLVLATGWIMASTQNTFRE 156

Query: 138 GF-LAAITAATAIIALKTKIHPLWLLFGGALAGYF 171
            + L  +T +  ++ LKT+I  LWLL GGA+ G+ 
Sbjct: 157 DWPLWLLTLSAVMLILKTRIGILWLLAGGAVLGWL 191


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.327    0.139    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 329,240
Number of extensions: 11981
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 2
Length of query: 176
Length of database: 1,000,347
Length adjustment: 76
Effective length of query: 100
Effective length of database: 749,927
Effective search space: 74992700
Effective search space used: 74992700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 125 (52.8 bits)