BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3405.p (541 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096439|ref|YP_001101514.1| glucan biosynthesis protein G [... 617 e-178 gi|134094727|ref|YP_001099802.1| glucan biosynthesis protein D [... 409 e-115 >gi|134096439|ref|YP_001101514.1| glucan biosynthesis protein G [Herminiimonas arsenicoxydans] Length = 510 Score = 617 bits (1592), Expect = e-178, Method: Compositional matrix adjust. Identities = 297/507 (58%), Positives = 381/507 (75%), Gaps = 11/507 (2%) Query: 39 ALAGLLALALP----QAALAFDFNTVAARAKALAGKSYKKPADDLPKSLKDLSYEQASQL 94 A +G+L LAL ALAFDFN VA RAK LA SYK+P ++ K L++L Y+Q + Sbjct: 11 AQSGMLLLALSFIPCVPALAFDFNDVAKRAKQLAATSYKEPQKNISKGLENLDYDQYRDI 70 Query: 95 YFRDDKSYWRAQKLPFELSFIHLGGSYTEPIKINEVVGDAVREIHFSPALFDYSANRSVD 154 ++ + +YWR+ KLPFEL+F H G + +KINEV G+ R I F FDY AN+ + Sbjct: 71 RYKRESAYWRSAKLPFELTFFHQGRQFESAVKINEVTGNRARPIPFDARAFDYGANK-LS 129 Query: 155 PRSLRNIGFAGFRIRFPLNSPKVKDDVLTFHGASYFRAMGKGQSYGLSARGLAIDTALYS 214 + L++ GF+GFR+ + LN P KD+++ F GASY RA+GK Q YGLSARGLA+DTAL S Sbjct: 130 AQDLKHAGFSGFRVHYALNKPTYKDELVVFLGASYLRAVGKQQIYGLSARGLAVDTALNS 189 Query: 215 GEEFPRFTEFWLERPSADAKELVIYALLDSPRATGAYRFVLKPGVDTVMDVKAQLYLRSN 274 GEEFPRF EFW+ERP+A++K+L IYALLDS R +GAYRF++KPG T+ +VK+QLYLR N Sbjct: 190 GEEFPRFVEFWIERPAANSKQLTIYALLDSRRVSGAYRFIVKPGEQTITEVKSQLYLREN 249 Query: 275 VTKLGIAPLTSMFLFGENQPGPADDFRPEVHDSDGLSMQSGTGEWLWRPLVNPKRLLVTS 334 V+KLGIAPLTSM+ FGENQ +D+RPEVHDSDGLS+QSGTGEW+WRPLVNPKRLLVTS Sbjct: 250 VSKLGIAPLTSMYFFGENQRAAVEDYRPEVHDSDGLSIQSGTGEWIWRPLVNPKRLLVTS 309 Query: 335 FSFDNPLGFGLMQRDRSFSHYEDLDYNYQSRPSAWVEPKGKWGSGRVELVQIPTPDETND 394 ++ NP GFGLMQRD ++YEDL+ Y++RPSAWVEP GKWG+GRVELVQIPTP+E ND Sbjct: 310 YTLSNPAGFGLMQRDEKQANYEDLEARYEARPSAWVEPMGKWGAGRVELVQIPTPNEFND 369 Query: 395 NIVAYWIPNTLPKPGQPFNVEYRLSWQKDNEKRPPLAYVTQTLFGHGYRPKQESKAEEVQ 454 NIV+YW+P+ LPKPGQP N +YR+SW K +K PPL++VTQT GHGY K ++ Sbjct: 370 NIVSYWVPDQLPKPGQPINFDYRMSWHKGAQKVPPLSWVTQTRRGHGYL----RKPDDSI 425 Query: 455 QLSIDFDGANLKKLPANARVEGVVEADANGKLASVTTRKNDVTGGWRVEVKLRRLEENKP 514 L +DF+G KKLP +A+++ V AD+NG++ +N TGGWR +++RR+++ KP Sbjct: 426 ALFVDFEGPIFKKLPKDAKIDVRVSADSNGEILESHVVQNPATGGWRAALRIRRVDDKKP 485 Query: 515 VELRGFLRNANGGTTLSETWSYILPPN 541 VELRGFL N TTLSETWSYILP + Sbjct: 486 VELRGFLHTVN--TTLSETWSYILPAD 510 >gi|134094727|ref|YP_001099802.1| glucan biosynthesis protein D [Herminiimonas arsenicoxydans] Length = 528 Score = 409 bits (1052), Expect = e-115, Method: Compositional matrix adjust. Identities = 223/507 (43%), Positives = 305/507 (60%), Gaps = 14/507 (2%) Query: 35 AAPAALAGLLALALPQAALAFDFNTVAARAKALAGKSYKKPADDLPKSLKDLSYEQASQL 94 +APA L L A FD+ + RA+ALAG+ Y P+ ++P ++K L ++Q + Sbjct: 28 SAPAKLKTL------GKAAPFDYAWLKGRARALAGQPYHFPSIEVPAAVKALDWDQYQSI 81 Query: 95 YFRDDKSYWRAQKLPFELSFIHLGGSYTEPIKINEVVGDAVREIHFSPALFDYSANRSVD 154 +RDD + W KL F+ F HLG T+ +KI+E+ RE+ + PA+F+Y + Sbjct: 82 AYRDDHALWGGDKLRFQTKFFHLGMYATQSVKIHELEDGKARELAYDPAMFNYGKSGLKG 141 Query: 155 PRSLRNIGFAGFRIRFPLNSPKVKDDVLTFHGASYFRAMGKGQSYGLSARGLAIDTALYS 214 +++GFAGFR+ F + + DV F GASYFRA+G YGLSARGLAID + Sbjct: 142 SDLPKDLGFAGFRVNFHTDLVR---DVAAFLGASYFRAVGGDWQYGLSARGLAIDCGMER 198 Query: 215 GEEFPRFTEFWLERPSADAKELVIYALLDSPRATGAYRFVLKPGVDTVMDVKAQLYLRSN 274 EEFPRFTEFWLERP+ + +LV+YALLDSP GAYRF + PG +MD+ LY R Sbjct: 199 PEEFPRFTEFWLERPALQSGKLVVYALLDSPSIAGAYRFEIMPGATLLMDIDLALYPRKA 258 Query: 275 VTKLGIAPLTSMFLFGENQPGPADDFRPEVHDSDGLSMQSGTGEWLWRPLVNPKRLLVTS 334 + ++GIAPLTSMFL EN ++D+RPE+HDSDGL+M +G GEW+WRPLVNP+ L + Sbjct: 259 IERMGIAPLTSMFLTAENDRRISNDWRPEIHDSDGLAMNTGKGEWIWRPLVNPEHLRFNA 318 Query: 335 FSFDNPLGFGLMQRDRSFSHYEDLDYNYQSRPSAWVEPKGKWGSGRVELVQIPTPDETND 394 + ++P GFGLMQRDR+F HY+D Y+ RPS WVEPK WG G ++LV+IPT DET D Sbjct: 319 YVDESPRGFGLMQRDRNFDHYQDDGVFYERRPSLWVEPKSGWGKGSIQLVEIPTVDETFD 378 Query: 395 NIVAYWIPNTLPKPGQPFNVEYRLSWQKDNEKRPPLAYVTQTLFGHGYRPKQESKAEEVQ 454 NIVA+W P P+PGQ Y+L W P A VT T G G ++ + Sbjct: 379 NIVAFWNPEAKPQPGQELLFGYKLYWGSKMPALPQAATVTATRTGIGGVVGKK-RTYFSW 437 Query: 455 QLSIDFDGANLKKLPANARVEGVVEADANGKLASVTTRKNDVTGGWRVEVKLRRLEE-NK 513 + ++DF G +L L N +VE V+ A G + + R D G+R L+ + Sbjct: 438 RFAVDFVGGDLALLGKNVKVEPVISA-TQGTIEITSARPLDDVKGYRAMFDLKIADNIQG 496 Query: 514 PVELRGFLRNANGGTTLSETWSYILPP 540 ++LR +L + G TLSETW Y P Sbjct: 497 AIDLRLYL--SADGQTLSETWLYQWTP 521 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.317 0.135 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,052,149 Number of extensions: 44200 Number of successful extensions: 107 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 101 Number of HSP's successfully gapped: 2 Length of query: 541 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 455 Effective length of database: 716,977 Effective search space: 326224535 Effective search space used: 326224535 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)